Locus 192

Sequence ID 2R_DroMel_CAF1
Location 1,449,168 – 1,449,287
Length 119
Max. P 0.524720
window440

overview

Window 0

Location 1,449,168 – 1,449,287
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.82
Mean single sequence MFE -37.78
Consensus MFE -32.88
Energy contribution -32.96
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.20
Structure conservation index 0.87
SVM decision value -0.02
SVM RNA-class probability 0.524720
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1449168 119 - 20766785
CUGGCGCUGGCACCCGAAACUCGUUCACUU-UUCGGGAUUCCCCUUUAGCGCUUAAUUAAUAUUGCAGGAGCGCAGGCGCCGGAUCCAAUCCGUUUGCAGCUGUUGCUCGCACAACUCCA
((((((((((..(((((((..........)-))))))...))......((((((..............)))))).)))))))).........(((((((((....))).))).))).... ( -39.44)
>DroSec_CAF1 67330 119 - 1
CUGGCGCUGGCACCCGAAACUCGUUCACUU-UUCGGGAUUCCCCUUUAGCGCUUAAUUAAUAUUGCAGGAGCGCAGGCGCCGGAUCCAAUCCGUUUGCAGCUGUUGCUCGCCCAACUCCA
((((((((((..(((((((..........)-))))))...))......((((((..............)))))).)))))))).........(((.(((((....))).))..))).... ( -37.24)
>DroSim_CAF1 66206 119 - 1
CUGGCGCUGGCACCCGAAACUCGUUCACUU-UUCGGGAUUCCCCUUUAGCGCUUAAUUAAUAUUGCAGGAGCGCAGGCGCCGGAUCCAAUCCGUUUGCAGCUGUUGCUCGCCCAACUCCA
((((((((((..(((((((..........)-))))))...))......((((((..............)))))).)))))))).........(((.(((((....))).))..))).... ( -37.24)
>DroEre_CAF1 76716 120 - 1
CUGGCGCUGGCACCCGAAUCCCGUCCACUUUUUCGGGAUUCCCCUUUAGCGCUUAAUUAAUAUUGGAGGAGCGCAGGCGCCGGAACCAAUCCGUUUGCAGCUGUUGCUCGCCCAACUCCA
.(((..(((((.((.((((((((..........)))))))).......((((((..(((....)))..)))))).)).)))))..)))....(((.(((((....))).))..))).... ( -42.30)
>DroYak_CAF1 72328 120 - 1
CUGGCGAUGGCACCCCAAACUCGUUCACUUUUUCGGGGUACCCCUUUAGUGCUUAAUUAAUAUUGCAGGAGCGCAGGCGCCGGGUCCAAUCCGUUUGCAGCUGUUGCUCGUCCACCUCCA
.((((((.((.(((((..................))))).))......................((((.(((((((((...((((...)))))))))).))).))))))).)))...... ( -32.67)
>consensus
CUGGCGCUGGCACCCGAAACUCGUUCACUU_UUCGGGAUUCCCCUUUAGCGCUUAAUUAAUAUUGCAGGAGCGCAGGCGCCGGAUCCAAUCCGUUUGCAGCUGUUGCUCGCCCAACUCCA
((((((((((..((((((.............))))))...))......((((((..............)))))).)))))))).............(((((....))).))......... (-32.88 = -32.96 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:57 2006