| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,200,478 – 7,200,578 |
| Length | 100 |
| Max. P | 0.995108 |
| Location | 7,200,478 – 7,200,578 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 74.60 |
| Mean single sequence MFE | -29.18 |
| Consensus MFE | -13.61 |
| Energy contribution | -13.87 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.47 |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.995108 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7200478 100 + 20766785 AACUUCCAAAGAGAGCUAAAGAUUUGGAUGUCUCCCUGAUACCGGAAUCUCCAAUCUCAAUAUCCCGAUCCUUUGGAGACACAUCCUCUUCACCGGGCAU ..........((((.....((((((.(.((((.....)))).).))))))....)))).....((((.......(((......))).......))))... ( -23.24) >DroSec_CAF1 135 100 + 1 AGCUUCCAAAGAGAGCUAGAGAUUUGGAUGUCUCCCUGGCACCCGAAUCUCUAAUCUCAACAUUCGGAUUCUUCGGAGAUACAUCCUCUUCGCCGGGCAU .(((......((((..(((((((((((.((((.....)))).))))))))))).))))......(((......((((((.......)))))))))))).. ( -36.00) >DroSim_CAF1 2993 100 + 1 AGCUUCCAAAGAGAGCUAAAGAUUUGGAUGUCUCCCUGACACCCGAAUCUCCAAUCUCAACAUUCGGGUUCUUGGGAGAUACAUCCUCUUCGCCGGGCAU ..............(((...((...(((((((((((.((.((((((((.............))))))))))..))))))..)))))...))....))).. ( -33.62) >DroEre_CAF1 2030 100 + 1 AACUCCCAAGGAGAGCUAGUGAUUUGGAUGUCGCUCUGACCCCCGAGUCCCCUAUGCCCAUAUCCCGCUCCUCCAGAGAUGCAUCCUCUCCACCGGCCAU ..((((...)))).((..(((....((((((..(((((......((((....(((....)))....))))...)))))..))))))....)))..))... ( -28.40) >DroYak_CAF1 3503 100 + 1 AACUCCCAAAGAGAGCUAGUGAUUUGGAUGUCGCUCUGACCCCCGAAUCACCUAUCCCAAUAUCCCGCUCCUCCAGAGAUAUAUCCUCUUCACCGGGCAU ....(((...((((((..(((((((((..(((.....)))..))))))))).(((....)))....))).))).((((.......)))).....)))... ( -25.00) >DroAna_CAF1 4365 91 + 1 GGCUGCCAAAAAGAGCCAGGGAUUUUGAGAUUUCUCUAACCUCUGAGG------UCCCCGAAUCCC---CUUUAGGCGAUUCUUCCUCCAUUCCUGGCAU ..............(((((((((...(((....)))........((((------.....(((((.(---(....)).)))))..)))).))))))))).. ( -28.80) >consensus AACUUCCAAAGAGAGCUAGAGAUUUGGAUGUCUCCCUGACACCCGAAUCUCCAAUCCCAAUAUCCCGAUCCUUCGGAGAUACAUCCUCUUCACCGGGCAU ..(((.....))).(((..((((((((.((((.....)))).))))))))........................((((.......))))......))).. (-13.61 = -13.87 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:14 2006