Locus 1913

Sequence ID 2R_DroMel_CAF1
Location 7,195,180 – 7,195,297
Length 117
Max. P 0.543719
window3166

overview

Window 6

Location 7,195,180 – 7,195,297
Length 117
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 89.86
Mean single sequence MFE -27.22
Consensus MFE -19.70
Energy contribution -20.38
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -1.73
Structure conservation index 0.72
SVM decision value 0.02
SVM RNA-class probability 0.543719
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7195180 117 - 20766785
GAAUGUAUCCCCUAAAUGGCUGUGGCAACACUGAAAAUAGUUUUCCCUUGUUUUGGUGUGGCCACACUGACUUUUGGCUUGCUAUUGUUUACAUUCAAUUAUUUCGACUUCUUAUUU-
(((((((..(....((((((((((((.((((..(((..((......))..)))..)))).))))))....(....)....)))))))..))))))).....................- ( -30.20)
>DroSec_CAF1 28249 118 - 1
GAAUUUAUCCCCUGAAUUGCUGUGGCAACACUGAAGAUAGUUUUCCCUUGUUUUGGUGGGGCCACACUAACUUUUGGCUUGCUAUUGUUUACAUUAAUUUAUUUCGACUUCUUAUUAC
............(((((((.((((((..(((..(((..((......))..)))..)))..))))))..(((...(((....)))..))).....)))))))................. ( -22.50)
>DroSim_CAF1 27679 117 - 1
GAAUUUAUCCCCUGAAUGGCUGUGGCAACACUGAAGAUAGUUUUCCCUUGUUUUGGUGUGGCCACACUGACUUUUGGCUUGCUAUUGUUUACAUUAAUUUAUUUCGACUUCUUAUUU-
..............((((((((((((.((((..(((..((......))..)))..)))).))))))....(....)....))))))...............................- ( -22.70)
>DroEre_CAF1 23246 117 - 1
GCAUUUUUGCCCUGAUUGGCUGUGGCAGCACUGCAGAUAGUUUUGCCUUGUUUUGGUGUGGCCACACUGACUUUUGGCUUGCUAUUGUUUACAUUCAUUUAUUUCGACUUCUAAUUU-
(((.....(((..(((..(.((((((.((((((((((....)))))........))))).)))))))..).))..))).)))...................................- ( -28.00)
>DroYak_CAF1 24954 117 - 1
UCAUAUUUCCAGUGAACGGCUGUGGCAGCACUGAAGAUAGUUUUCGCUUGUUUUGGUGUGGCCACACUGCCUGUUGGCUUGCUAUUGUUUACAUUUAUUUAUUUCGCCUUCUAAUUU-
...........(((((((((((((((.((((..(((..(((....)))..)))..)))).))))))..(((....)))..)))...)))))).........................- ( -32.70)
>consensus
GAAUUUAUCCCCUGAAUGGCUGUGGCAACACUGAAGAUAGUUUUCCCUUGUUUUGGUGUGGCCACACUGACUUUUGGCUUGCUAUUGUUUACAUUAAUUUAUUUCGACUUCUUAUUU_
..............((((((((((((.(((((((((..((......))..))))))))).))))))(........)....))))))................................ (-19.70 = -20.38 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:13 2006