| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,193,930 – 7,194,039 |
| Length | 109 |
| Max. P | 0.523547 |
| Location | 7,193,930 – 7,194,039 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.41 |
| Mean single sequence MFE | -24.04 |
| Consensus MFE | -15.24 |
| Energy contribution | -18.80 |
| Covariance contribution | 3.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7193930 109 + 20766785 ---GAAAGUUUUUAGGCACUUAUGUAUAUGUGAGUAAAAAACAUUUUCGCUUGCGAUAUGCAC-------AAGAUAGUGUU-AACAAAGACACCAGUAUAAUAAUAUUCUAGUUACAUAU ---....((..(((((..(((.((((((((..((..(((.....)))..))..).))))))).-------)))...(((((-......)))))..............)))))..)).... ( -22.60) >DroSec_CAF1 27190 116 + 1 UUUGAAAGUUUCUAGGCACCU----ACAUGUGUUUAAAAAACAUUUUCUCUUGCGAUUGGCGUAUCUACUAAGAUAGUAUUAACCAAAGACACUAGAAUAUUAAUAUUCUAGUUGCAUAU ...((((((((.(((((((..----....))))))).))...))))))...(((((((((......(((((...)))))....)))).....((((((((....)))))))))))))... ( -21.60) >DroSim_CAF1 26426 115 + 1 UUUGAAAGUUUUCAGGCACCU----ACAUGUGUUUAAGAAACAUUUUCGCUUGCGAUUGGCGUAUCUACUAAGAUAGUGUU-ACCAAAGACACUAGAAUAUUAAUAUUCUAGUUGCAUAU ...((((((((((((((((..----....))))))..)))).))))))...(((((((((.((((.........(((((((-......)))))))........)))).)))))))))... ( -27.93) >consensus UUUGAAAGUUUUUAGGCACCU____ACAUGUGUUUAAAAAACAUUUUCGCUUGCGAUUGGCGUAUCUACUAAGAUAGUGUU_ACCAAAGACACUAGAAUAUUAAUAUUCUAGUUGCAUAU ...((((((((((((((((..........))))))))))...))))))...(((((((((.((((.........(((((((.......)))))))........)))).)))))))))... (-15.24 = -18.80 + 3.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:12 2006