Locus 1911

Sequence ID 2R_DroMel_CAF1
Location 7,193,708 – 7,193,828
Length 120
Max. P 0.606789
window3164

overview

Window 4

Location 7,193,708 – 7,193,828
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 82.78
Mean single sequence MFE -41.05
Consensus MFE -26.02
Energy contribution -28.28
Covariance contribution 2.25
Combinations/Pair 1.24
Mean z-score -1.78
Structure conservation index 0.63
SVM decision value 0.15
SVM RNA-class probability 0.606789
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7193708 120 + 20766785
GCGGGGCAAGUCGUUGGAGGAAAUUGAGCGAAAGAUGAUGGGCCGUGUGCCCAUGUCCUCGGUGGUCAACAUCAAGCCAUUUCCUUUCAACAUGUAAAUGGCGUGUUGCUAAGGAUCUGA
.((((((.........(((((.......(....)...((((((.....)))))).)))))((((.....))))..)))...(((((.((((((((.....))))))))..))))).))). ( -43.30)
>DroSec_CAF1 26921 120 + 1
GCGGGGCAAGUCGCUGGAGGAAAUCGAGCGAAAGAUGAUGGGCCGUGUGCCCAUAUCCGCGGUGGUCAACAUCAAGCCAUUUUCCUUUAACAUGUAAAUGGCGUGUUGCUAAGGAUCUGA
(((((.....(((((.((.....)).)))))......((((((.....)))))).)))))((((.....))))....((...(((((((((((((.....))))))))..)))))..)). ( -42.70)
>DroSim_CAF1 26157 120 + 1
GCGGGGCAAGUCGCUGGAGGAAAUCGAGCGAAAGAUGAUGGGCCGUGUGCCCAUAUCCGCGGUGGUCAACAUCAAGCCAUUUUCCUUCAACAUGUAAAUGGCGUGUUGCUAAGGAUCUGA
(((((.....(((((.((.....)).)))))......((((((.....)))))).)))))((((.....))))....((...(((((((((((((.....))))))))..)))))..)). ( -44.30)
>DroAna_CAF1 23964 113 + 1
GCGUGGCAAGACCCUGGAGGAAAUCGAGCAGAAGUUGACGGGCA------CCAUGUCCGCGAUGAUUAACUUUAAGCCUUUGCCCAUGAACAUGUAAACGUCCU-UUACCAGGGUCCACA
..((((....(((((((((((......((((((((((((((((.------....)))))......))))))))..((....)).........))).....))))-...))))))))))). ( -33.90)
>consensus
GCGGGGCAAGUCGCUGGAGGAAAUCGAGCGAAAGAUGAUGGGCCGUGUGCCCAUAUCCGCGGUGGUCAACAUCAAGCCAUUUCCCUUCAACAUGUAAAUGGCGUGUUGCUAAGGAUCUGA
(((((.....(((((.((.....)).)))))......((((((.....)))))).)))))((((.....))))....((..(((((.((((((((.....))))))))..)))))..)). (-26.02 = -28.28 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:11 2006