Locus 1910

Sequence ID 2R_DroMel_CAF1
Location 7,193,360 – 7,193,480
Length 120
Max. P 0.876267
window3163

overview

Window 3

Location 7,193,360 – 7,193,480
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.58
Mean single sequence MFE -42.51
Consensus MFE -32.64
Energy contribution -31.27
Covariance contribution -1.37
Combinations/Pair 1.35
Mean z-score -2.00
Structure conservation index 0.77
SVM decision value 0.89
SVM RNA-class probability 0.876267
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7193360 120 + 20766785
UGUGUCCCAUUUGGGUUGGUUGCCACUCACUUGCUUCGUUAUCUACAUUCUGGGAUUCUCCCUGGGCUUCGGACCCAUUCCCUGGCUGAUGAUGGGUGAGAUUCUGCCAGCCAAGAUUCG
........((((.(((((((.....(((((((...((((((.(((......(((.....)))(((((....).)))).....))).)))))).))))))).....))))))).))))... ( -38.60)
>DroSec_CAF1 26565 120 + 1
UGUGUCCCAUUUGGGUUGGUUGCCACUCUCUUGCUUCGUCAUCUACAUUCUGGGAUUCUCCCUGGGCUUCGGACCCAUUCCCUGGCUGAUGAUGGGCGAGAUUCUGCCAGCCAAGAUUCG
.....(((....)))(((((((.((...(((((((.(((((((..((....(((.....)))(((((....).)))).....))...))))))))))))))...)).)))))))...... ( -44.20)
>DroSim_CAF1 25801 120 + 1
UGUGUCCCAUUUGGGUUGGCUGCCACUCACUUGCUUCGUCAUCUACAUUCUGGGAUUCUCCCUGGGCUUCGGACCCAUUCCCUGGCUGAUGAUGGGCGAGAUUCUGCCAGCCAAGAUUCG
.....(((....)))(((((((.((....((((((.(((((((..((....(((.....)))(((((....).)))).....))...)))))))))))))....)).)))))))...... ( -44.60)
>DroAna_CAF1 23619 120 + 1
CGUCAGCGACUUGGGCUGGUUGCCCUUGACCUGUUUUGUCGUCUAUGUCAUUGGCUUCUCUAUGGGAUUUGGACCAAUACCCUGGCUAAUGAUGGGCGAAAUCCUGCCGGCCAAAGUCCG
.....(.(((((.((((((((((((..(((.......)))......((((((((((......(((........))).......))))))))))))))).......))))))).)))))). ( -42.63)
>consensus
UGUGUCCCAUUUGGGUUGGUUGCCACUCACUUGCUUCGUCAUCUACAUUCUGGGAUUCUCCCUGGGCUUCGGACCCAUUCCCUGGCUGAUGAUGGGCGAGAUUCUGCCAGCCAAGAUUCG
........((((.(((((((.........((((((.(((((((........(((.....)))..((((..(((.....)))..))))))))))))))))).....))))))).))))... (-32.64 = -31.27 +  -1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:10 2006