Locus 1905

Sequence ID 2R_DroMel_CAF1
Location 7,177,126 – 7,177,220
Length 94
Max. P 0.651988
window3157

overview

Window 7

Location 7,177,126 – 7,177,220
Length 94
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 88.94
Mean single sequence MFE -21.48
Consensus MFE -19.35
Energy contribution -19.72
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.35
Structure conservation index 0.90
SVM decision value 0.25
SVM RNA-class probability 0.651988
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7177126 94 - 20766785
AAACCCACAAACAAAACGACGAUCGGCGGCGUCUGGCUUGACUAGUUAGUCAUA--CAGUU-UCAGUCUGCCAGCCAGUAUGCAAAGAUUAAAAUGC
....................((((....(((((((((((((((....)))))..--(((..-.....)))..)))))).))))...))))....... ( -22.60)
>DroSec_CAF1 10459 95 - 1
AAAUCCACAAACAAAACGACGAUCAACGGCGUCUGGCUUGACUAGUUAGUCAUA--CAGUUUUUAGUCUGCCAACCAGUAUGCAAAGAUUAAAAUAC
....................((((....((((((((..(((((....)))))..--(((........)))....)))).))))...))))....... ( -17.30)
>DroSim_CAF1 9124 95 - 1
AAACCCACAAACAAAACGACGAUCGGCGGCGUCUGGCUUGACUAGUUAGUCAUA--CAGUUUUUAGUCUGCCAGCCAGUAUGCAAAGAUUAAAAUAC
....................((((....(((((((((((((((....)))))..--(((........)))..)))))).))))...))))....... ( -22.90)
>DroEre_CAF1 8072 94 - 1
AAACCCACAAACAAAACGACGAUCGGCGGCGUCUGGCCUGACUAGUUAGUCAUA--CAGUG-UCAGUCUGCCAGCCAGUAUGCAAAGAUUAAAAUAC
....................(((((((((((.(((((((((((....))))...--.)).)-)))).).))).))).(....)...))))....... ( -21.70)
>DroYak_CAF1 9026 96 - 1
AAACCCACAAACAAAACGACGAUCGGCGGCGUCUGGCUUGACUAGUUAGUCAUACACAGUU-UCAGUCUGGCAGCCAGUAUGCAAAGAUUAAAAUAC
....................((((....(((((((((((((((....)))))....(((..-.....)))..)))))).))))...))))....... ( -23.50)
>DroAna_CAF1 7582 88 - 1
AAU---AUGGAAAAAUGAACGAUCG---GCGUCUGGCUUGACUAGUUAGUCAUA--CGGCC-AUAGUCUGCCAUCCAGUAUGCAAAGAUUAAAAUAC
...---..............((((.---((((((((..(((((....)))))..--.(((.-.......)))..)))).))))...))))....... ( -20.90)
>consensus
AAACCCACAAACAAAACGACGAUCGGCGGCGUCUGGCUUGACUAGUUAGUCAUA__CAGUU_UCAGUCUGCCAGCCAGUAUGCAAAGAUUAAAAUAC
....................((((....(((((((((((((((....)))))....(((........)))..)))))).))))...))))....... (-19.35 = -19.72 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:04 2006