Locus 1903

Sequence ID 2R_DroMel_CAF1
Location 7,172,464 – 7,172,555
Length 91
Max. P 0.663136
window3155

overview

Window 5

Location 7,172,464 – 7,172,555
Length 91
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 91.35
Mean single sequence MFE -31.85
Consensus MFE -29.20
Energy contribution -29.45
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.92
SVM decision value 0.27
SVM RNA-class probability 0.663136
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7172464 91 + 20766785
CAGCCGGAAGCUGCACGUCUGGCUACCCAAGAGGGCUACCAAGUC----AAGUGAUCUUGGGGGCGCUCAACAAUGUUUGGCCAGGAACGUAACA
(((.(....)))).(((((((((((..((.(((.((..(((((((----....)).)))))..)).))).....))..)))))))..)))).... ( -35.20)
>DroSec_CAF1 5985 90 + 1
CAGCCGGAAGCUGCUCGUCUGGCUACCCAAGAGGGCUACCAAGUC----GAGUGAUCUUGG-GGCGCUCAACAAUGUUUGGCCAGGAACGUAACA
(((.(....))))....((((((((..((.(((.(((.(((((((----....)).)))))-))).))).....))..))))))))......... ( -30.70)
>DroSim_CAF1 4595 90 + 1
CAGCCGGAAGCUGCUCGUCUGGCUACCCAAGAGGGCUACCAAGUC----GAGUGAUCUUGG-GGCGCUCAACAAUGUUUGGCCAGGAACGUAAUA
(((.(....))))....((((((((..((.(((.(((.(((((((----....)).)))))-))).))).....))..))))))))......... ( -30.70)
>DroEre_CAF1 3559 93 + 1
CAGCCGGAAGCUGGUCGUCUGGCUACCCAAGAG-GCUCCCAAGUCGAUCGAGAGAUCUUGG-GGCGCUCCACAAUGUUUGACCAGGUAAGUAACA
..(((((.(((..(....)..))).))...(((-((.(((((...((((....))))))))-))).)))...............)))........ ( -30.80)
>consensus
CAGCCGGAAGCUGCUCGUCUGGCUACCCAAGAGGGCUACCAAGUC____GAGUGAUCUUGG_GGCGCUCAACAAUGUUUGGCCAGGAACGUAACA
(((.(....))))....((((((((..((.(((.(((.(((((((........)).))))).))).))).....))..))))))))......... (-29.20 = -29.45 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:02 2006