Locus 1899

Sequence ID 2R_DroMel_CAF1
Location 7,155,214 – 7,155,313
Length 99
Max. P 0.535214
window3150

overview

Window 0

Location 7,155,214 – 7,155,313
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.07
Mean single sequence MFE -32.57
Consensus MFE -20.44
Energy contribution -20.83
Covariance contribution 0.39
Combinations/Pair 1.19
Mean z-score -1.55
Structure conservation index 0.63
SVM decision value 0.00
SVM RNA-class probability 0.535214
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7155214 99 + 20766785
AGGGCGCCGACAACCGUUAGUCUGCUUACAGAGCAACAUCUUUAACCUGUC----------------UGCCAAGAUUUUGCGGA-UGCAAUGCGCACUUGGCAGCAAAGGCCCAGC----
.((((((.(((........))).))(((.(((......))).)))..((.(----------------(((((((....((((.(-(...)).))))))))))))))...))))...---- ( -32.20)
>DroSec_CAF1 18402 99 + 1
AGGGCGCCGACAACCGUUAGUCCGCUUAGAGAGCAACAUCUUUAACCUGUC----------------UGCCAAGAUUUUGCGGA-UGCAAUGCGCACUUGGCAGCUAAGGCCCAGC----
.((((((.(((........))).))(((((((......))))))).((..(----------------(((((((....((((.(-(...)).))))))))))))...))))))...---- ( -35.50)
>DroSim_CAF1 18905 99 + 1
AGGGCGCCGACAACCGUUAGUCCGCUUAGAGAGCAACAUCUUUAACCUGUC----------------UGCCAAGAUUUUGCGGA-UGCAAUGCGCACUUGGCAGCUAAGGCCCAGC----
.((((((.(((........))).))(((((((......))))))).((..(----------------(((((((....((((.(-(...)).))))))))))))...))))))...---- ( -35.50)
>DroEre_CAF1 20356 99 + 1
AGGGCGUCGACAACCGUUAGUCCGCUUAGAGAGCAACAUCUUUAACCUGUC----------------UGCCAAGAUUUUGCGGA-UGCAAUGCGCACUUGGCAGCAAAAUCGCAGC----
.((((..((.....))...))))(((((((((......)))))))..((.(----------------(((((((....((((.(-(...)).)))))))))))))).....))...---- ( -31.50)
>DroYak_CAF1 18735 99 + 1
AGGGCGCCGACAACCGUUAGUCCGCUUAGAGAGCAACAUCUUUAACCUGUC----------------UGCCAAGAUUUUGCGGA-UGCAAUGCGCACUUGGCAGCAAAAUCGCAGC----
.((((..((.....))...))))(((((((((......)))))))..((.(----------------(((((((....((((.(-(...)).)))))))))))))).....))...---- ( -30.80)
>DroAna_CAF1 15370 119 + 1
AGGAAGCAGUCAUUGAUUGGUCCUCCCACAUUGCAACAUCGAUGACCUUUCAUGUGGCAUUGCUUUUGGCCAAGAUUCUGUUGAUUGUAUUGCGCAUUUGGCUUCAAAU-CCAAGCAUCA
..(((((.((((((((((((.....))).........)))))))))....((.((((((.(((..(..((.........))..)..))).))).))).)))))))....-.......... ( -29.90)
>consensus
AGGGCGCCGACAACCGUUAGUCCGCUUAGAGAGCAACAUCUUUAACCUGUC________________UGCCAAGAUUUUGCGGA_UGCAAUGCGCACUUGGCAGCAAAGGCCCAGC____
(((..((.(((........))).)).((((((......)))))).)))...................(((((((....((((.(......).)))))))))))................. (-20.44 = -20.83 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:57 2006