| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,122,221 – 7,122,319 |
| Length | 98 |
| Max. P | 0.637291 |
| Location | 7,122,221 – 7,122,319 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 67.71 |
| Mean single sequence MFE | -24.33 |
| Consensus MFE | -10.75 |
| Energy contribution | -10.42 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7122221 98 + 20766785 UUGUACUUGUUGUUUAUA--------------------UAGCUGUUGCGGAAGCAGCAAUGCAAAUUGUUAAAUAAUGUCAAGUGAAAUUGCGUUUUUG-UAAGCGGAAAGUGUGUUUG ...(((((.(((((((((--------------------.(((((((((....))))))..(((((((((...))))).((....))..)))))))..))-))))))).)))))...... ( -24.30) >DroPse_CAF1 155883 82 + 1 AU--GCGUGUUGCUU-------------------------GUUACUUCGGAAGCAGCAAUGCAAAUUGUUGAAUAAUGUCAAGUGGAAUUGCGCU---G-CAAGCGGGAG-CAU----- .(--((((((((((.-------------------------(((.(....).)))))))))))...................((((......))))---)-)).((....)-)..----- ( -22.70) >DroEre_CAF1 155559 118 + 1 UUGUAGUUGUUGUUUAUACAUACAUAUAUGUACAUGUGUAGCUGUUGCGGAAGCAGCAAUGCAAAUUGUUAAAUAAUGUCAAGUGAAAUUGCGUUUUUG-UAAGCGGAAAGUGUGUUUU ..((((((((((((((.((((((((((......)))))))((((((((....))))))..))....))))))))))).((....)))))))).((((((-....))))))......... ( -27.40) >DroYak_CAF1 159547 110 + 1 UUGUAGUUGUUGUUUAUACAUACAAAUAUG--------UAGCUGUUGCGGAAGCAGCAAUGCAAAUUGUUAAAUAAUGUCAAGUGAAAUUGCGUUUUUG-UAAGCGGAAAGUGUGUUUU .................((((((.(((.((--------((..((((((....)))))).)))).))).....................((.(((((...-.))))).)).))))))... ( -24.70) >DroMoj_CAF1 207646 89 + 1 CUGCUUUGGCUGCUGGCG--------------------CUGUUGGUGCGGAAACAGCGAUGCAAAUUGUUGAAUAAUGUCAAGUAAAAUUGCGCGCAUGAUAAAUGAAA---------- ((((.(..((.((....)--------------------).))..).))))...(((((.(((((.((.((((......))))...)).)))))))).))..........---------- ( -21.90) >DroPer_CAF1 155236 82 + 1 AU--GCGUGUUGCUU-------------------------GUUACUGCGGAAGCAGCAAUGCAAAUUGUUGAAUAAUGUCAAGUGGAAUUGCGCU---G-CAAGCGGGAG-CAU----- ((--((.(.((((((-------------------------((..((((....)))(((((.((.....((((......)))).))..))))))..---)-))))))).))-)))----- ( -25.00) >consensus UUGUACUUGUUGCUUAUA____________________UAGCUGUUGCGGAAGCAGCAAUGCAAAUUGUUAAAUAAUGUCAAGUGAAAUUGCGCUUUUG_UAAGCGGAAA_UGU_____ ........................................(((..(((....)))(((((.....(((...........))).....)))))..........))).............. (-10.75 = -10.42 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:36 2006