| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,445,398 – 1,445,513 |
| Length | 115 |
| Max. P | 0.781879 |
| Location | 1,445,398 – 1,445,513 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.04 |
| Mean single sequence MFE | -24.86 |
| Consensus MFE | -21.36 |
| Energy contribution | -22.04 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.781879 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445398 115 - 20766785 GC-----CAGUUACUCAGUGCACAAAUCCACCCUUUCCGCCCAGGGACCCAAAUACGUUUACAGCAAUAAACGUGUUGAUUUAUUGAUUUUGCACGUCGCAUAAUUUACUUUACCUGCAU ..-----..........(((((.(((((..((((........)))).....((((((((((......))))))))))........))))))))))...((((((......)))..))).. ( -25.10) >DroSec_CAF1 63459 114 - 1 GC-----CAGUUACUCGGUGCACA-AUCCACCCUUUCCGCCCAGGGACCCAAAUACGUUUACAGCAAUAAACGUGUUGAUUUAUUGAUUUUGCACGUCGCAUAAUUUACUUUACCUGCAU ..-----..........(((((.(-(((..((((........)))).....((((((((((......))))))))))........)))).)))))...((((((......)))..))).. ( -25.20) >DroSim_CAF1 62078 115 - 1 GC-----CAGUUACUCGGUGCACAAAUCCACCCUUUCCGCCCGGGGACCCAAAUACGUUUACAGCAAUAAACGUGUUGAUUUAUUGAUUUUGCACGUCGCAUAAUUUACUUUACCUGCAU ..-----..........(((((.(((((..((((........)))).....((((((((((......))))))))))........))))))))))...((((((......)))..))).. ( -24.90) >DroEre_CAF1 72949 120 - 1 GCAGCUGCAGUUACUCAGCGCACAAAUCCACCCCUUCCGCCCAGGGACCCAAAUACGUUUACAGCAAUAAACGUGUUGAUUUAUUGAUUUUGCACGUCGCAUAAUUUACUUUACCUGCAU (((((((.((...))))))(((.(((((...((((.......)))).....((((((((((......))))))))))........))))))))......................))).. ( -26.30) >DroYak_CAF1 70091 115 - 1 GC-----CAGUUGCUCAGUGCAUAAAUCCACCCUUUUCGCCCAGAGACCCAAAUACGUUUACAGCAAUAAACGUGUUGAUUUAUUGAUUUUGCACGUCGCAUAAUUUACUUUACCUGCAU ..-----....(((...(((((.(((((......((((.....))))....((((((((((......))))))))))........))))))))))...)))................... ( -22.80) >consensus GC_____CAGUUACUCAGUGCACAAAUCCACCCUUUCCGCCCAGGGACCCAAAUACGUUUACAGCAAUAAACGUGUUGAUUUAUUGAUUUUGCACGUCGCAUAAUUUACUUUACCUGCAU .................(((((.(((((..((((........)))).....((((((((((......))))))))))........))))))))))...((((((......)))..))).. (-21.36 = -22.04 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:42 2006