Locus 1889

Sequence ID 2R_DroMel_CAF1
Location 7,121,936 – 7,122,030
Length 94
Max. P 0.611956
window3126

overview

Window 6

Location 7,121,936 – 7,122,030
Length 94
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 80.36
Mean single sequence MFE -20.74
Consensus MFE -7.76
Energy contribution -8.96
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -2.18
Structure conservation index 0.37
SVM decision value 0.16
SVM RNA-class probability 0.611956
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7121936 94 + 20766785
UCGGAAACAGGGUCACCCUAAUG-------------UAAAGGAAACAAGUGAGAAAUUAAGCAAUGCA--UGAUGCCAAAAGAAGGCGUGAGGGGCGUAAGAUGGAAAG
..(....)((((...))))..((-------------(...(....)...(((....))).)))((((.--(.(((((.......))))).)...))))........... ( -19.40)
>DroSec_CAF1 149633 94 + 1
GCAGAAACAGGGUCACCCUAAUG-------------UAAAGGAAACAAGUGAGAAAUUAAGCAAUGCA--UGAUGCCAAAAGAAGGCGUGAGGGGCGUAAGAUGGAAAG
((......((((...))))....-------------....(....)..............)).((((.--(.(((((.......))))).)...))))........... ( -18.60)
>DroEre_CAF1 155260 93 + 1
CCAGAAACAGGGUCACCCUAAUG-------------UAAAGGAAACAAGUGAGAAAUUAAGCAAUGCA--UGAUGCCAAAAGAAGGCGUGAGG-GGGUGAGGUGGAAAG
((.......)).(((((((.(((-------------((..(....)...(((....))).....))))--).(((((.......)))))...)-))))))......... ( -23.00)
>DroYak_CAF1 159261 92 + 1
--AGAAUCAGAGUCACCCUAAUG-------------UAAAGGAAACAAGUGAGAAAUUAAGCAAUGCA--UGAUGCCAAAAGAAGGCGUGAGGGGGGUGAGGUGGAAAG
--....((.(..(((((((.(((-------------((..(....)...(((....))).....))))--).(((((.......)))))....)))))))..).))... ( -23.40)
>DroAna_CAF1 152140 98 + 1
-----AUUAGGAGCACCCUAUUGUGUGUGCGAGUGUUAACGGGAACAAGUGAGAAAUUAAGCAAUGCAUAUGAUGCCCCAA--AG----GAGUGGAGUGAGAGGGAUGG
-----........((((((.....(((((((..((((...(....)...(((....))))))).)))))))...((.(((.--..----...))).))...)))).)). ( -19.30)
>consensus
_CAGAAACAGGGUCACCCUAAUG_____________UAAAGGAAACAAGUGAGAAAUUAAGCAAUGCA__UGAUGCCAAAAGAAGGCGUGAGGGGCGUGAGAUGGAAAG
...............((((.....................(....)..........................(((((.......))))).))))............... ( -7.76 =  -8.96 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:35 2006