| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,108,539 – 7,108,630 |
| Length | 91 |
| Max. P | 0.686418 |
| Location | 7,108,539 – 7,108,630 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 91.71 |
| Mean single sequence MFE | -20.85 |
| Consensus MFE | -15.15 |
| Energy contribution | -15.28 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7108539 91 - 20766785 UUUUUAUUUCUUUCCCU---U-UUUUCAUUAGUGGAUGUGGUAAACGUUGCGCAUGACUUGUAAAGUUCAAGUUUUCCUUGAAGGAGGGAUAUUU ............(((((---(-((((.....((((((((.....))))).)))..((((((.......))))))......))))))))))..... ( -20.80) >DroSec_CAF1 136565 90 - 1 UUUUUAUUUCUUUC-CU---U-UUUUUAUUAGUGGAUGUGGUGAACGUUGCGCAUGACUUGUAAAGUUCAAGUUUUCUUUGAAAGAGGGAUAUUU ............((-((---(-((((((..((..(((....(((((.(((((.......))))).))))).)))..)).)))))))))))..... ( -20.80) >DroSim_CAF1 136539 90 - 1 UUUUUAUUUCUUUC-CU---U-UUUUCAUUAGUGGAUGUGGUGAACGUUGCGCAUGACUUGUAAAGUUCAAGUUUUCUUUGAAAGAGGGAUAUUU ............((-((---(-((((((..((..(((....(((((.(((((.......))))).))))).)))..)).)))))))))))..... ( -23.00) >DroEre_CAF1 141575 92 - 1 UUUUUACUUCUUUC-CUCUUUUUUUUCAUUAGUGGAUGUGGUAAACGUUGCGCAUGACUUGUAAAGUUCAAGUUUUCUUCACAAGAGGGAU--UU ...........(((-(((((...........((((((((.....))))).)))..((((((.......))))))........)))))))).--.. ( -18.80) >consensus UUUUUAUUUCUUUC_CU___U_UUUUCAUUAGUGGAUGUGGUAAACGUUGCGCAUGACUUGUAAAGUUCAAGUUUUCUUUGAAAGAGGGAUAUUU ......((((((((.................((((((((.....))))).)))..((((((.......))))))......))))))))....... (-15.15 = -15.28 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:32 2006