Locus 1883

Sequence ID 2R_DroMel_CAF1
Location 7,087,322 – 7,087,423
Length 101
Max. P 0.992328
window3118

overview

Window 8

Location 7,087,322 – 7,087,423
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 90.30
Mean single sequence MFE -32.26
Consensus MFE -26.46
Energy contribution -26.82
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -2.44
Structure conservation index 0.82
SVM decision value 2.32
SVM RNA-class probability 0.992328
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7087322 101 - 20766785
CGACCACGAAGAGCCCCCUGCUGGCCAGAAAUAAGAUAUGGCCGCUAAUAGGCUACAACUUUAUUGGCCAGCCUCUGCUUUUGGCUACGACUCCAGUUUCA
......(.((((((.....(((((((((....(((...(((((.......)))))...)))..)))))))))....)))))).)................. ( -30.30)
>DroSec_CAF1 115461 99 - 1
CGUCCAUGAA--GCCCCCUGCUGGCCAGAAAUAAGAUAUGGCCGCUAAUAGGCUACAACUUUAUUGGCCAGCCUCUGCUUUUGGCCACGACUCCAGUUGCA
.(.(((.(((--((.....(((((((((....(((...(((((.......)))))...)))..)))))))))....)))))))).).((((....)))).. ( -33.50)
>DroSim_CAF1 114390 101 - 1
CGCCCAUGAAGAGCCCCCUGCUGGCCAGAAAUAAGAUAUGGCCGCUAAUAGGCUACAACUUUAUUGGCCAGCCGCUGCUUUUGGCCACGACUCCAGUUGCA
.(((...(((((((.....(((((((((....(((...(((((.......)))))...)))..))))))))).))).)))).)))..((((....)))).. ( -34.40)
>DroEre_CAF1 119888 95 - 1
------UGAAGUGCCCCAUGCUGGCCAGAAAUAAGAUAUGGCCGCUAAUAGGCUACAACUUUAUUGGCCAGCCUUCGCUUUUGGCUCCGACUCCAGUUGCA
------.((((........(((((((((....(((...(((((.......)))))...)))..)))))))))))))((..((((........))))..)). ( -31.60)
>DroYak_CAF1 124094 101 - 1
CGCCCAUGAAGUGCCCCAUGCUGGCCAGAAAUAAGAUAUGGCCGCUAAUAGGCUACAACUUUAUUGGCCAGCCUUCGGUUUUAACUUCGACUCCAGUUUCA
......(((((((((....(((((((((....(((...(((((.......)))))...)))..)))))))))....)))....))))))............ ( -31.50)
>consensus
CGCCCAUGAAGAGCCCCCUGCUGGCCAGAAAUAAGAUAUGGCCGCUAAUAGGCUACAACUUUAUUGGCCAGCCUCUGCUUUUGGCUACGACUCCAGUUGCA
...................(((((((((....(((...(((((.......)))))...)))..)))))))))....((..((((........))))..)). (-26.46 = -26.82 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:28 2006