Locus 1876

Sequence ID 2R_DroMel_CAF1
Location 7,060,584 – 7,060,676
Length 92
Max. P 0.524953
window3108

overview

Window 8

Location 7,060,584 – 7,060,676
Length 92
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 83.09
Mean single sequence MFE -27.57
Consensus MFE -16.53
Energy contribution -16.20
Covariance contribution -0.33
Combinations/Pair 1.22
Mean z-score -2.26
Structure conservation index 0.60
SVM decision value -0.02
SVM RNA-class probability 0.524953
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7060584 92 - 20766785
CCACUAAGCCAGUAGAACCACCAAAA---------------CGCUCCACUU--GGUGGGGCGGAGCCAGCAAUUGGCCCUUGGCCCUCGAAUAAAAUAUGGAAAAUAAA
.......(((((..(..(((((((..---------------........))--)))))..)((.(((((...))))))))))))......................... ( -25.20)
>DroSec_CAF1 89004 92 - 1
CCACUAAGCCAGUUGAACCACCAAAA---------------CGCUCCACUU--GGUGGGGCGGAGCCAGCAAUUGGCCCUUGGCCCUGGAAUAAAAUAUGGAAAAUAAA
(((....((((((((..(((((((..---------------........))--)))))(((...)))..))))))))((........)).........)))........ ( -27.20)
>DroSim_CAF1 87145 92 - 1
CCACUAAGCCAGUUGAACCACCAAAA---------------CGCUCCACUU--GGUGGGGCGGAGCCAGCAAUUGGCCCUUGGCCCUGGAAUAAAAUAUGGAAAAUAAA
(((....((((((((..(((((((..---------------........))--)))))(((...)))..))))))))((........)).........)))........ ( -27.20)
>DroEre_CAF1 91742 101 - 1
CCACUGAGCAAGUUGCACCACCAA-AACCAGCAAAU-----CACUGCACUU--GGUGGGGCGGAGCCAGAAAUUGGCCCUUGGCCCUGGAAUAAAAUAUGGAAAAUAAA
((((((.((...((((.(((((((-...(((.....-----..)))...))--))))).)))).))))).....((((...)))).............)))........ ( -29.20)
>DroYak_CAF1 92171 107 - 1
CCACUAAGCCAGUUAAACCACCAAAAACCAGCAAAACACACCACUUCACUU--GGUGGGGCGGAGUCAGCAAUUGGCCCUUGGCCCUGGAUUAAAAUAUGGAAAAUAAA
........(((.((((.(((..................(((((.......)--))))((((.(((...((.....)).))).))))))).))))....)))........ ( -25.00)
>DroAna_CAF1 92893 97 - 1
CUGCUAAACCCUUGGAGCCACCAAAA-------AAC-----CACUACGCCUCAGAUGGGGCGUGGCCAGCAAUUGGCCCUUGGCUCUGGAAUAAAAUAUGGAAAAUAAA
...........(..((((((......-------...-----....(((((((....)))))))((((((...))))))..))))))..).................... ( -31.60)
>consensus
CCACUAAGCCAGUUGAACCACCAAAA_______________CACUCCACUU__GGUGGGGCGGAGCCAGCAAUUGGCCCUUGGCCCUGGAAUAAAAUAUGGAAAAUAAA
....................(((..................((((........))))((((.(((((((...)))))..)).))))............)))........ (-16.53 = -16.20 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:18 2006