Locus 1875

Sequence ID 2R_DroMel_CAF1
Location 7,055,973 – 7,056,079
Length 106
Max. P 0.611904
window3107

overview

Window 7

Location 7,055,973 – 7,056,079
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -35.20
Consensus MFE -27.50
Energy contribution -28.33
Covariance contribution 0.84
Combinations/Pair 1.09
Mean z-score -2.71
Structure conservation index 0.78
SVM decision value 0.16
SVM RNA-class probability 0.611904
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7055973 106 - 20766785
CGAAAUGAAAGUCGAGGCGACAAGGCCAUUAAUUUGGUGCCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGCUUCUUUUGACUCCAUUU
..(((((...((((((((......))).....(((((...))))))))))((((((((..(((((((...))))))).((((....))))..)))))))).))))) ( -34.60)
>DroSec_CAF1 84101 106 - 1
CGAAAUGAAAGUCGAGGCGACAAGACCAUUAAUUUGGUCUCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGCUUCUUUUGACUCCAUUU
..(((((...((((((....).((((((......)))))).....)))))((((((((..(((((((...))))))).((((....))))..)))))))).))))) ( -35.80)
>DroSim_CAF1 81981 106 - 1
CGAAAGGAAAGUCGAGGCGACAAGGCCAUUAAUUUGGUGCCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGCUUCUUUUGACUCCAUUU
.....(((..((((((((......))).....(((((...)))))))))).(((((((..(((((((...))))))).((((....))))..)))))))))).... ( -35.70)
>DroEre_CAF1 87390 106 - 1
CGAACUGAAAGUCGAGGCGACAAGGCCAUUAAUUUGGAGCCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGCUUCUCUCGACUCCAUUU
.........(((((((((......)))........((((((((((..(((.(.......)(((((((...)))))))..)))))))))))))..))))))...... ( -37.90)
>DroYak_CAF1 87423 106 - 1
CAAAAUGAAAGUCGAGGCGACAAGGCCAUUAAUUUGGAGCCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGCUUCUUUCGACUCCAUUU
..(((((..(((((((((......)))........((((((((((..(((.(.......)(((((((...)))))))..)))))))))))))..)))))).))))) ( -39.80)
>DroAna_CAF1 85440 104 - 1
CAAAAUGAAAGUCG-GGCGACAAUGCCAUUAAUUUA-AGUCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGGCUUCUUGGUCUCCAUUU
..(((((......(-((((((..((((.........-..........)))))))......(((((((...)))))))..))))..((((((....))))))))))) ( -27.41)
>consensus
CGAAAUGAAAGUCGAGGCGACAAGGCCAUUAAUUUGGAGCCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGCUUCUUUUGACUCCAUUU
..(((((..(((((((((......)))........((.(((((((..(((.(.......)(((((((...)))))))..)))))))))).))..)))))).))))) (-27.50 = -28.33 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:17 2006