Locus 1873

Sequence ID 2R_DroMel_CAF1
Location 7,050,078 – 7,050,168
Length 90
Max. P 0.601082
window3105

overview

Window 5

Location 7,050,078 – 7,050,168
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 81.01
Mean single sequence MFE -27.65
Consensus MFE -18.37
Energy contribution -18.42
Covariance contribution 0.05
Combinations/Pair 1.19
Mean z-score -1.49
Structure conservation index 0.66
SVM decision value 0.14
SVM RNA-class probability 0.601082
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7050078 90 - 20766785
ACGCAAAAGCAAAAGCGGUAGCAA------CCGGCGGGUUGAGCUCGAGCCGCCUCAGCGACUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA
.(((..........))).(((((.------(((((((.(((....))).)))))(((....(..((....))..)..))))))))))......... ( -28.60)
>DroPse_CAF1 81821 77 - 1
------------GAGCUGUGGCAG------CCA-CAGCCACAGUCCGAGCCGCCUCAGCGGUUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA
------------(..(((((((..------...-..)))))))..).(((.((((((....(..((....))..)..))))))))).......... ( -29.10)
>DroSec_CAF1 78218 90 - 1
ACGCAAAAGCAAAAGCGGUAGCAA------CCAGCGGGUUUAGCUCGAGCCGCCUCAGCGACUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA
..((.(..((....))..).))..------(((.((((.....))))(((.((((((....(..((....))..)..)))))))))......))). ( -25.40)
>DroSim_CAF1 76145 90 - 1
ACGCAAAAGCAAAAGCGGUAGCAA------CCAGCGGGUUGAGUUCGAGCCGCCUCAGCGACUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA
.(((..........))).(((((.------...((((.(((....))).))))((((....(..((....))..)..)))).)))))......... ( -25.00)
>DroEre_CAF1 81399 82 - 1
------AAGCAAAUGCGGUAGCAA------CCGGCG-GUUGAGC-CGAGCCGCCUCAGCGGCUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA
------..((....))..(((((.------((((((-(((....-..)))))))(((....(..((....))..)..))))))))))......... ( -26.80)
>DroAna_CAF1 79327 91 - 1
-----GCAGCCACUUCAGUAGCCACUGUUGCCAGCAGGUUGAGCUCGAGACGCCUCAGCGGUUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA
-----..(((.((((((....((((.(((((.(((..(((((((.......).)))))).))))))))...))))..))))))))).......... ( -31.00)
>consensus
_____AAAGCAAAAGCGGUAGCAA______CCAGCGGGUUGAGCUCGAGCCGCCUCAGCGACUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA
..............((....))........(((.((((.....))))((.(((((((....(..((....))..)..)))))))))......))). (-18.37 = -18.42 +   0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:15 2006