Locus 1871

Sequence ID 2R_DroMel_CAF1
Location 7,038,035 – 7,038,126
Length 91
Max. P 0.874332
window3103

overview

Window 3

Location 7,038,035 – 7,038,126
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 83.36
Mean single sequence MFE -22.05
Consensus MFE -18.84
Energy contribution -19.48
Covariance contribution 0.64
Combinations/Pair 1.22
Mean z-score -2.04
Structure conservation index 0.85
SVM decision value 0.89
SVM RNA-class probability 0.874332
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7038035 91 + 20766785
CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAAGAAAACAAAAAGCGCUGUAAAAAGAAUGACUUCGUG
(((((((((.....))))))...((((((((.....(((((.(((((....))))).)))))...))).((......))....)))))))) ( -20.20)
>DroPse_CAF1 69367 84 + 1
CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAAACGAACAAAACCCAAUGAGAGAG-------GCGGCC
.....(((.(((((((.....)))))))((((....((((((.((((....)))).)))))).....)))).......-------...))) ( -16.50)
>DroSec_CAF1 66151 91 + 1
CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAAGCAAACUAAAAGCGCUGUAAAAAGAAUGACUCCGUG
(((((((((.....)))))).....((((((......((((((((((....))))))))))....)))))).................))) ( -24.70)
>DroSim_CAF1 64095 91 + 1
CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAAGCAAACAAAAAGCGCUGUAAAAAGAAUGACUCCGUG
(((((((((.....)))))).....((((((.....(((((((((((....)))))))))))...)))))).................))) ( -26.70)
>DroYak_CAF1 68782 82 + 1
CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAGGCAAACAAAAAGCGCUGUUAAAAGACU---------
...((((((.....))))))((((.((((((.....(((((((((((....)))))))))))...)))))).))))......--------- ( -26.40)
>DroPer_CAF1 68696 84 + 1
CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAAACGAGCAAAAACUAAUGAGAGAG-------GCGGCC
.....(((..(((((.((.(((((......(....)((((((.((((....)))).))))))....))))).))))))-------)..))) ( -17.80)
>consensus
CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAAGCAAACAAAAAGCGCUGUAAAAAGAAU___UCCGUG
...((((((.....)))))).....((((((.....(((((((((((....)))))))))))...)))))).................... (-18.84 = -19.48 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:13 2006