Locus 1870

Sequence ID 2R_DroMel_CAF1
Location 7,031,071 – 7,031,167
Length 96
Max. P 0.695755
window3102

overview

Window 2

Location 7,031,071 – 7,031,167
Length 96
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 76.44
Mean single sequence MFE -28.07
Consensus MFE -13.54
Energy contribution -14.65
Covariance contribution 1.11
Combinations/Pair 1.17
Mean z-score -1.96
Structure conservation index 0.48
SVM decision value 0.34
SVM RNA-class probability 0.695755
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7031071 96 + 20766785
-UGU-------UGCAUUUGGUCGCUUGAUCGAUGCGAAUACACGGAUCGGGAGAAAUUAUAUGGCUGCCG------UGGCGGUCGAUUCAAAUUUUUCAAUUUCUCGAAA
-..(-------((((((.((((....))))))))))).........((((((((........((((((..------..))))))((..........))..)))))))).. ( -27.70)
>DroVir_CAF1 75448 101 + 1
---AUGCGAUCAGCAUGUGUGC-UGUGAUCGAUGCGAAAACACGGCCUAAAAGAAAUUAUAUGGCUGCUGU-----UUGCUGUCGAUUCAAAUUUUUCAAUUUCUCGAAC
---...(((.(((((....)))-))((((((((((((..((((((((((.((....)).)).))))).)))-----)))).))))).)))..............)))... ( -27.10)
>DroPse_CAF1 62377 103 + 1
UGACUACACUCUGAGUGUGGUCAA-UGAUCGAUGCGAAUACAUGGAUCGGGAGAAAUUAUAUGGCUGCCG------UGGCUGUCGAUUCAAAUUUUUCAAUUUCUCAAAA
(((((((((.....))))))))).-(((((.(((......))).))))).((((((((....(((.((..------..)).)))((..........)))))))))).... ( -33.80)
>DroYak_CAF1 60778 102 + 1
-GGU-------UGCAUUUGGUCGCUUGAUCGAUGCGAAUACACGGAUCGGGAGAAAUUAUAUGGCUGCCGUGGCCGUGGCGGUUGAUUCAAAUUUUUCAAUUUCUCAAAA
-..(-------((((((.((((....)))))))))))...(((((..(((.((..((...))..)).)))...)))))(..(((((..........)))))..)...... ( -27.30)
>DroMoj_CAF1 85329 85 + 1
-------------------UUC-AGUGAUCGAUGCGAAAACACGGCCCAAAAGAAAUUAUAUGGCUGCUGU-----UUGCUGUCGAUUCAAAUUUUUCAAUUUCACGAAC
-------------------...-..((((((((((((..((((((((...((....))....))))).)))-----)))).))))).))).................... ( -18.70)
>DroPer_CAF1 61263 103 + 1
UGACUACACUCUGAGUGUGGUCAA-UGAUCGAUGCGAAUACAUGGAUCGGGAGAAAUUAUAUGGCUGCCG------UGGCUGUCGAUUCAAAUUUUUCAAUUUCUCAAAA
(((((((((.....))))))))).-(((((.(((......))).))))).((((((((....(((.((..------..)).)))((..........)))))))))).... ( -33.80)
>consensus
_G_C_______UGCAUGUGGUC_A_UGAUCGAUGCGAAUACACGGAUCGGGAGAAAUUAUAUGGCUGCCG______UGGCUGUCGAUUCAAAUUUUUCAAUUUCUCAAAA
............................(((((.((......)).)))))((((((((....(((.((((......)))).)))((..........)))))))))).... (-13.54 = -14.65 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:12 2006