Locus 187

Sequence ID 2R_DroMel_CAF1
Location 1,444,907 – 1,445,022
Length 115
Max. P 0.516876
window424

overview

Window 4

Location 1,444,907 – 1,445,022
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.57
Mean single sequence MFE -40.02
Consensus MFE -27.70
Energy contribution -28.18
Covariance contribution 0.48
Combinations/Pair 1.16
Mean z-score -1.68
Structure conservation index 0.69
SVM decision value -0.03
SVM RNA-class probability 0.516876
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1444907 115 - 20766785
UCAAGUCGCUCCUGCUCCGGAAACGAAAGCGGUUUUCAUAUGCAUGUGCGCGCCCAGCAGCACAAACAAACAAGCGCAUGUACACACAGCGUUGUGCUGAGCUUAUGUGUGUGUG-----
...........(((((.((....))..)))))....((((((((((((.((......(((((((.........((((.(((....)))))))))))))).)).))))))))))))----- ( -36.40)
>DroSec_CAF1 62968 115 - 1
UCAAGUCGCUCC-----CGGAAACGAAAGCGGUUUUCAUAUGCAUGUGCGCGCCCAGCAGCACAAACAAACAACCGCAUGUGCACACAGCGUUGUGCUGAGCGUGUGUGUGUGUGGGUGU
..((..((((..-----((....))..))))..))(((((((((((..(((......((((((((.........(((.(((....)))))))))))))).)))..))))))))))).... ( -45.30)
>DroSim_CAF1 61582 120 - 1
UCAAGUCGCUCCUGCUCCGGAAACGAAAGCGGUUUUCAUAUGCAUGUGCGCGCCCAGCAGCACAAACAAACAACCGCAUGUGCACACAGCGUUGUGCUGAGCGUAUGUGUGUGUGGGUGU
......((((.(((((.((....))..)))))....(((((((((((((((......((((((((.........(((.(((....)))))))))))))).))))))))))))))))))). ( -45.60)
>DroEre_CAF1 72437 116 - 1
UCAAGUCGUUCUUGCUCCGGAAACGAAAGCGGUUUUCAUAUGCAUGUGCGCGCCCAGCAGCACAAGCAAACAACCGCAUGCACACA----UCUGUGUUAAGCGUAUGUGUGUGGCUGUGU
...((((..........((....))...((((((......(((.(((((((.....)).))))).)))...))))))..(((((((----(.(((.....))).)))))))))))).... ( -40.60)
>DroYak_CAF1 69604 108 - 1
UCAAGUCGUUCUUGCUCCGGAAACGAAAGCGGUUUUCAUAUGCAUGUGCGCGCCCAGCAGCACAAACAAACAACCGCAUGCACACA----GUUGUGUUGAGGGCAUGUGUGU--------
...........(((((.((....))..)))))....(((((((.(((((((.....)).))))).........((.((.(((((..----..))))))).)))))))))...-------- ( -32.20)
>consensus
UCAAGUCGCUCCUGCUCCGGAAACGAAAGCGGUUUUCAUAUGCAUGUGCGCGCCCAGCAGCACAAACAAACAACCGCAUGUACACACAGCGUUGUGCUGAGCGUAUGUGUGUGUG_GUGU
..((..((((.......((....))..))))..)).((((((((..(((((.....(((((..............)).)))(((((......)))))...)))))..))))))))..... (-27.70 = -28.18 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:40 2006