| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,008,506 – 7,008,615 |
| Length | 109 |
| Max. P | 0.830385 |
| Location | 7,008,506 – 7,008,615 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.49 |
| Mean single sequence MFE | -27.18 |
| Consensus MFE | -16.65 |
| Energy contribution | -16.77 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.830385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7008506 109 - 20766785 C---------CGCAGC--ACACACACAUGUGUGUGGUCCUCGCUGAUUUACUGAAUCAUCGGAAAGUGCACUGAGAAAAAAAGCCAUCAAAACACAGACACAACAAGUCUAAGAACUUAA .---------.((..(--((((((....)))))))...((((.((((((.((((....)))).)))).)).)))).......))...........((((.......)))).......... ( -23.90) >DroSec_CAF1 37002 109 - 1 C---------CGCAGC--ACACACACAUGUGUGUGGUCCUCGCUGAUUUACUGAAUCAUCGGGUAGUGCACUUAGAGAAAAAACUGUCAAAAUAGAGACACAAUACUGCUAAGAACUUAA .---------.(((.(--((((((....)))))))...((((.((((((...)))))).))))...))).(((((.........((((........))))........)))))....... ( -28.83) >DroSim_CAF1 35297 109 - 1 C---------CGCAGC--ACACACACAUGUGUGUGGUCCUCGCUGAUUUACUGAAUCAUCGGGAAGUGCACUUAGAGAAAAAACUUUCAAAAUAGAGACACAAUAAGGCUAAGAACUUAA .---------.(((.(--((((((....))))))).(((.((.((((((...)))))).)))))..))).(((((.........((((......))))..........)))))....... ( -27.71) >DroEre_CAF1 39476 100 - 1 C---------CGCAGCGCACACACACAUGUGUGUGGUCCUCGCUGAUUUACUGAAUCAUCGGGCAGUGCACUCGGAGAAAAA-A-------G---UGCCACAACCAGGCUUAGAACCUGA (---------((.((.((((.(((((....)))))...((((.((((((...)))))).))))..)))).))))).......-.-------.---.........((((.......)))). ( -30.80) >DroYak_CAF1 37638 108 - 1 C---------UGCAGC--ACACACACGUGUGUGUGGUCCUCGCUGAUUUACUGAAUCAUCGGGCUGUGCACUCAGAGAAAAA-CUGUCAGAAUUCAGACACAACCAGGCUUAAAACUUUA .---------.((.((--(((((....)))))))(((.....((((.((.((((.........(((......))).......-...)))))).)))).....)))..))........... ( -26.01) >DroAna_CAF1 37676 105 - 1 CGAGGGAGCUCGUAUC--ACACAUACAUGUGUGUGGUCUCCACUGAUUUACUGAAUCAUCGGUCAGGACACUGAGAGAAAAGACUGCCUAAAAAG-------------UUAUGUAUUUUA ..(((.((.((...((--((((((....))))))))((((((.((.((((((((....))))).))).)).)).))))...)))).)))......-------------............ ( -25.80) >consensus C_________CGCAGC__ACACACACAUGUGUGUGGUCCUCGCUGAUUUACUGAAUCAUCGGGCAGUGCACUCAGAGAAAAAACUGUCAAAAUAGAGACACAACAAGGCUAAGAACUUAA ...........(((.....((((((....))))))...((((.((((((...)))))).))))...)))................................................... (-16.65 = -16.77 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:07 2006