| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,999,481 – 6,999,571 |
| Length | 90 |
| Max. P | 0.983051 |
| Location | 6,999,481 – 6,999,571 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 93.00 |
| Mean single sequence MFE | -24.88 |
| Consensus MFE | -20.54 |
| Energy contribution | -21.06 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.983051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6999481 90 + 20766785 AACCAUUUGCGGCCGGCCAGCCUUAAUUGAAGUCAUUUUUCAGUUCGGUAGCUGGCACUAUUUUCAAGUUACGAUCGCUUAUUGGAACUU ..(((...(((..((((((((((.((((((((.....)))))))).))..))))))(((.......)))..))..)))....)))..... ( -28.80) >DroSec_CAF1 28047 90 + 1 AACCAUUUGCGGCCGGCCAGCCUUAAUUGAACUCAUUUUUCAGUUCGGUAGCUGGCACUAUUUUCAGGUUACGAUCGCUUGUUAGAACUU ........(((..((((((((....((((((((........)))))))).)))))).((......))....))..)))............ ( -24.40) >DroSim_CAF1 26314 90 + 1 AACCAUUUGCGGCCGGCCAGCCUUAAUUGAACUCAUUUUUCAGUUCGGUAGCUGGCACUAUUUUCAGGUUACGAUCGCUUGUAAGAACUU ....((..(((..((((((((....((((((((........)))))))).)))))).((......))....))..)))..))........ ( -24.80) >DroEre_CAF1 30441 86 + 1 AACCACUUGC----GGCCAGCCUUAAUUGAACUCAUUUUUCAGUUCGGUAGCUGGCACUAUUUUCAGGUUACGAUCGCUUGUUAGAACCU ....((..((----(((((((....((((((((........)))))))).)))))).((......))........)))..))........ ( -21.30) >DroYak_CAF1 28476 90 + 1 AACCACUUGCGACCGGCCAGCCUUAAUUGAACUCAUUUUUCAGUUCGGUAGCUGGCACUAUUUUCAGGUUACGAUCGCCUCGGAGAACUU ..((....((((.((((((((....((((((((........)))))))).)))))).((......))....)).))))...))....... ( -25.10) >consensus AACCAUUUGCGGCCGGCCAGCCUUAAUUGAACUCAUUUUUCAGUUCGGUAGCUGGCACUAUUUUCAGGUUACGAUCGCUUGUUAGAACUU ........((((.((((((((....((((((((........)))))))).))))))(((.......)))..)).))))............ (-20.54 = -21.06 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:06 2006