Locus 1856

Sequence ID 2R_DroMel_CAF1
Location 6,972,781 – 6,972,875
Length 94
Max. P 0.741685
window3083

overview

Window 3

Location 6,972,781 – 6,972,875
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 87.59
Mean single sequence MFE -26.73
Consensus MFE -21.91
Energy contribution -22.25
Covariance contribution 0.34
Combinations/Pair 1.21
Mean z-score -2.15
Structure conservation index 0.82
SVM decision value 0.45
SVM RNA-class probability 0.741685
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6972781 94 - 20766785
UGGAGUGAGUAUGGGCAUUUACAUUGGCCAAAGAGAAUGGCAACAAACCUGGGAUAAUUGAGGGAGGUCAGUGUGUAACGGUAUUUAGCAUCCG
.(((.(((((((.(.....((((((((((........((....))..(((.((....)).)))..))))))))))...).)))))))...))). ( -28.50)
>DroSec_CAF1 2583 94 - 1
UGGAGUGAGUAUGGGCAUUUACAUUGGCCAAAGAGAAUGGCAACAAACCUGGGAUAAUUGAGGGAGGUCAGUGUGUAACGGUACUUAGCAUCCG
.(((.(((((((.(.....((((((((((........((....))..(((.((....)).)))..))))))))))...).)))))))...))). ( -30.80)
>DroSim_CAF1 2567 94 - 1
UGGAGUGAGUAUGGGCAUUUACAUUGGCCAAAGAGAAUGGCAACAAACCUGGGAUAAUUGAGGGAGGUCAGUGUGUAACGGUACUUAGCAUCCG
.(((.(((((((.(.....((((((((((........((....))..(((.((....)).)))..))))))))))...).)))))))...))). ( -30.80)
>DroEre_CAF1 2555 94 - 1
UGAGGUGAGUAUGGGCAUUUACAUUGGCCAAAUAGAGUGGCAACAAACCUGGGAUAAUUGAGGGAGGUCAGUGUGUAUCGGUAUUUAGCAUCCG
...(.(((((((.((....((((((((((........((....))..(((.((....)).)))..))))))))))..)).))))))).)..... ( -26.90)
>DroYak_CAF1 2630 94 - 1
UGAAGUGAGUAUGGGCAUUUACAUUGGCCAAAGAGAAUGGCAACAAACCUGGGAUAAUUGAGGGAGGUCAGUGUGUAUCGGUAUUUAGCAUCCG
.....(((((((.((....((((((((((........((....))..(((.((....)).)))..))))))))))..)).)))))))....... ( -24.60)
>DroAna_CAF1 2072 91 - 1
GGGUUUCAGUAUGGGAAUGGAUGGAAGCCAACUA---AGACAACAAACCUUGGAUUGUUAAUGGAGGUUAGCGUGUAACGGUAUUUGGUAUCCG
..(((((......)))))....(((.(((((((.---..(((...((((((.(........).))))))....)))...)))...)))).))). ( -18.80)
>consensus
UGGAGUGAGUAUGGGCAUUUACAUUGGCCAAAGAGAAUGGCAACAAACCUGGGAUAAUUGAGGGAGGUCAGUGUGUAACGGUAUUUAGCAUCCG
.(((.(((((((.(.....((((((((((........((....))..(((.((....)).)))..))))))))))...).)))))))...))). (-21.91 = -22.25 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:54 2006