Locus 1854

Sequence ID 2R_DroMel_CAF1
Location 6,970,257 – 6,970,377
Length 120
Max. P 0.859847
window3080

overview

Window 0

Location 6,970,257 – 6,970,377
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 88.11
Mean single sequence MFE -47.38
Consensus MFE -39.99
Energy contribution -40.22
Covariance contribution 0.23
Combinations/Pair 1.26
Mean z-score -2.19
Structure conservation index 0.84
SVM decision value 0.82
SVM RNA-class probability 0.859847
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6970257 120 - 20766785
CCGACUCCUCCUCCUUCUCCAUGCCACUGGGCAUUUGAGGCACUGCCCGGUUGAUGGCUGAGUACUCGGGGAGGUCGGGCAGCUCCUCCGCCAAGUAGAUGGGCAUCUGCUUGGACGGAU
(((((..((((.....(((...(((((((((((..........))))))))....))).))).....))))..)))))........((((((((((((((....)))))))))).)))). ( -56.00)
>DroVir_CAF1 38 120 - 1
CCGACUCUUCCUCUUUUUCCAUGCCGCUAGGCAUUUGUGGAACAGCACGAUUGAUGGCCGAAUACUCUGGCAAAUCGGGCAGCUCCUCCGCCAAGUAGAUGGGCAUCUGCUUGGACGGAU
................(((((((((....))))....)))))..((.(((((....((((.......)))).))))).))......((((((((((((((....)))))))))).)))). ( -43.30)
>DroGri_CAF1 38 120 - 1
CCGACUCUUCCUCUUUCUCCAUGCCACUGGGCAUUUGUGGCACGGCUCGAUUAAUGGCCGAAUACUCGGGCAAAUCGGGCAACUCCUCGGACAAGUAGAUCGGCAUCUGCUUGGACGGAU
(((..............(((.((((((.........))))))..((((((((..((.((((....)))).))))))))))........)))(((((((((....)))))))))..))).. ( -45.40)
>DroWil_CAF1 3561 120 - 1
CUGAUUCCUCCUCCUUUUCCAUGCCGCUGGGCAUUUGCGGCACAGCCCGAUUGAUGGCUGAAUAUUCGGGUAGAUCGGGCAGCUCUUCGGCCAAGUAGAUGGGCAUCUGCUUGGACGGAU
.....(((..........((.((((((.........))))))..((((((((..((.((((....)))).))))))))))........))((((((((((....))))))))))..))). ( -46.90)
>DroMoj_CAF1 38 120 - 1
CCGACUCUUCCUCUUUCUCCAUGCCACUUGGCAUCUGUGGCACGGCGCGAUUAAUGGCCGAAUACUCGGGCAAAUCGGGCAGCUCCUCCGCCAAGUAGAUGGGCAUCUGCUUGGACGGAU
...................(.((((((.........)))))).)((.(((((..((.((((....)))).))))))).))......((((((((((((((....)))))))))).)))). ( -47.20)
>DroAna_CAF1 38 120 - 1
CCGACUCCUCCUCCUUCUCCAUACCGCUGGGCAUCUGCGGUACCGCCCUAUUAAUGGCUGAGUACUCGGGCAGAUCGGGCAGUUCCUCCGCCAAGUAGAUGGGCAUCUGCUUGGACGGAU
..((((...............((((((.........))))))..((((.(((..((.((((....)))).))))).))))))))..((((((((((((((....)))))))))).)))). ( -45.50)
>consensus
CCGACUCCUCCUCCUUCUCCAUGCCACUGGGCAUUUGUGGCACAGCCCGAUUAAUGGCCGAAUACUCGGGCAAAUCGGGCAGCUCCUCCGCCAAGUAGAUGGGCAUCUGCUUGGACGGAU
.....................((((((.........))))))..((((((((..((.((((....)))).))))))))))......((((((((((((((....)))))))))).)))). (-39.99 = -40.22 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:51 2006