Locus 1851

Sequence ID 2R_DroMel_CAF1
Location 6,968,662 – 6,968,782
Length 120
Max. P 0.579455
window3075

overview

Window 5

Location 6,968,662 – 6,968,782
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.98
Mean single sequence MFE -29.92
Consensus MFE -19.85
Energy contribution -21.80
Covariance contribution 1.95
Combinations/Pair 1.26
Mean z-score -1.92
Structure conservation index 0.66
SVM decision value 0.09
SVM RNA-class probability 0.579455
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6968662 120 + 20766785
CGGCUCUCUGGCCGCCAUUAUUGCUUUCCAGCGAAACCACGCUAUACGCAAAAUCGGGUUUAUAUGUGUAAAUUUUUCGGGCGAUUUAUCAACCAGAUUGCGUUCGCUGAUGCAUGAAAA
(((((....))))).......(((....(((((((.((..((.....))......((((((((....))))))))...))(((((((.......))))))).)))))))..)))...... ( -29.30)
>DroVir_CAF1 14972 116 + 1
CGGCU--CUGGCCGCCAUUACUGCU-UCCAGCAAAACCACGCUAUACGCAAAAUUCGUGAAAUUUGUGUAAAUUUUUUU-ACGAAUUAUCAACAAAAUUGUGCGUGCAGGUGUGUGAAAA
((((.--...)))).......(((.-....)))...(((((((.(((((..(((((((((((...((....))..))))-)))))))....(((....))))))))..)))))).).... ( -30.50)
>DroPse_CAF1 13734 116 + 1
CGGCUCUCUGGCCGCCAU---UGCUUUCCAGCAAAACCACGCUAUACGCAAAAUCUA-CGAAUUUGUGUAAAUUUUUCAAGCGAAUUAUCAACAAAAUUUCGCUUGCAGGUGUGUGAAAA
(((((....)))))...(---((((....)))))..(((((((.((((((((.((..-.)).)))))))).......((((((((.............))))))))..)))))).).... ( -32.82)
>DroGri_CAF1 16824 116 + 1
CGGCU--AUGGCCGCCAUUACUGCU-UCCAGCAAAACCACGCUAUACGCAAAAUUCGUGAAAUUUGUGUAAAUUUUUCA-GCGAAUUAUCAACAAAAUUGUGCGUGCAGGUGUGUGAAAA
((((.--...)))).......(((.-....)))...(((((((.(((((..(((((((((((..(......)..)))))-.))))))....(((....))))))))..)))))).).... ( -29.40)
>DroAna_CAF1 23007 110 + 1
CGGCUCUCUGGCCGCCAUUAUUGCUUUCCAGCAAAACCACGCUAUACGCAAAAUCGGG----------AAAAUUUUUCGAGCAAUUUAUCAACAAAAUUGCGCUCGCUGAUGCAUGAAAA
(((((....))))).......(((....((((........((.....))....(((..----------(.....)..)))(((((((.......)))))))....))))..)))...... ( -24.70)
>DroPer_CAF1 13680 116 + 1
CGGCUCUCUGGCCGCCAU---UGCUUUCCAGCAAAACCACGCUAUACGCAAAAUCUA-CGAAUUUGUGUAAAUUUUUCAAGCGAAUUAUCAACAAAAUUUCGCUUGCAGGUGUGUGAAAA
(((((....)))))...(---((((....)))))..(((((((.((((((((.((..-.)).)))))))).......((((((((.............))))))))..)))))).).... ( -32.82)
>consensus
CGGCUCUCUGGCCGCCAUUA_UGCUUUCCAGCAAAACCACGCUAUACGCAAAAUCCG_CAAAUUUGUGUAAAUUUUUCAAGCGAAUUAUCAACAAAAUUGCGCUUGCAGGUGUGUGAAAA
(((((....))))).......((((....))))....(((((..((((((((.((....)).)))))))).......((((((((((........)))).)))))).....))))).... (-19.85 = -21.80 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:47 2006