Locus 185

Sequence ID 2R_DroMel_CAF1
Location 1,442,898 – 1,443,018
Length 120
Max. P 0.651676
window421

overview

Window 1

Location 1,442,898 – 1,443,018
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.81
Mean single sequence MFE -29.40
Consensus MFE -24.85
Energy contribution -25.09
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.35
Structure conservation index 0.85
SVM decision value 0.25
SVM RNA-class probability 0.651676
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1442898 120 + 20766785
AAUACUAUCAUAAAAUUUCGCGCAAGCGUGUGUCUCGGCAUUUUAACCGAAACGGGUUUUGAGCCAUGCCACCUCUUUCCACCCGUCGUGCUCCUGCGAACAAGCCGCACACACCCAGCA
...................((....))((((((..((((.............(((((...(((.........))).....)))))((((......))))....)))).))))))...... ( -31.20)
>DroSec_CAF1 60888 120 + 1
AAUACUAUCAUAAAAUUUCGCGCAAGCGUGUGUCUCGGCAUUUUAACCGAAACGGGUUUUGAGCCAUGCCACCUCUUCCCACCCGUCGUGCUCCUGCGAACAAGCCGCACACACCCAGCA
...................((....))((((((..((((.............(((((...(((.........))).....)))))((((......))))....)))).))))))...... ( -31.20)
>DroSim_CAF1 59647 120 + 1
AAUACUAUCAUAAAAUUUCGCGCAAGCGUGUGUCUCGGCAUUUUAACCGAAACGGGUUUUGAGCCAUGCCACCUCUUCCCACCCGUCGUGCUCCUGCGAACAAGCCGCACACACCCAGCA
...................((....))((((((..((((.............(((((...(((.........))).....)))))((((......))))....)))).))))))...... ( -31.20)
>DroEre_CAF1 70083 115 + 1
AAUACUAUCAUAAAAUUUCGCGCAAGCGUGUGUCUCGGCAUUUUAACCGAAACGGGUUUUGAGUCAUGCCACCACUUGCCAC---UCCUGCUCCUGCGAACAAGCCGCACACGCCCAG--
...................((....))((((((..((((.......(((...)))((((.((((...((........)).))---))..((....))))))..)))).))))))....-- ( -27.30)
>DroYak_CAF1 65773 115 + 1
AAUACCAUCAUAAAAUUUCGCGCAAGCGUGUGUCUCGGCAUUUUAACCGAAACGGGUUUUGAGCCAUGCCACCUCUUUCCAU---UCGUGCUCCUGUGAACAAGCCACACACACCCUG--
...................((....))((((((...(((.((..((((......))))..))))).................---..(((((..((....)))).)))))))))....-- ( -26.10)
>consensus
AAUACUAUCAUAAAAUUUCGCGCAAGCGUGUGUCUCGGCAUUUUAACCGAAACGGGUUUUGAGCCAUGCCACCUCUUCCCACCCGUCGUGCUCCUGCGAACAAGCCGCACACACCCAGCA
...................((....))((((((..((((.......(((...)))((((.(((.((((..................)))))))....))))..)))).))))))...... (-24.85 = -25.09 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:37 2006