Locus 1848

Sequence ID 2R_DroMel_CAF1
Location 6,955,296 – 6,955,390
Length 94
Max. P 0.917080
window3066

overview

Window 6

Location 6,955,296 – 6,955,390
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 71.53
Mean single sequence MFE -19.93
Consensus MFE -13.05
Energy contribution -12.83
Covariance contribution -0.22
Combinations/Pair 1.12
Mean z-score -1.50
Structure conservation index 0.65
SVM decision value 1.11
SVM RNA-class probability 0.917080
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6955296 94 + 20766785
GAGAGGAGGAUUGCCCAGUUACCCACUGGCUGCCUCCAGUUACCCACUUUUAAUGACAAGUGCUAAAGUUGAGCAUUUAAUAAAUAAACGUAGA
....(((((...(((.(((.....))))))..)))))....................(((((((.......)))))))................ ( -22.00)
>DroSec_CAF1 25922 83 + 1
GAGAGGAGGAUUGCCCA--------ACGGCUGCCUCCAGUUACCCACUUUUAAUGACACUUGCUAAAGUUAAGCAUUAAAUAAAUAAG---AGA
....(((((...(((..--------..)))..)))))...........(((((((..((((....))))....)))))))........---... ( -20.40)
>DroYak_CAF1 28281 72 + 1
AAGAGGAGGAUUGCCGA--------AGGGUCGCCUCCAGUUACCCACAUUUC--------------AGUUGAGCAUUAAAUGAAUAAACGAAGA
....(((((...(((..--------..)))..)))))...........((((--------------.(((...(((...)))....))))))). ( -17.40)
>consensus
GAGAGGAGGAUUGCCCA________ACGGCUGCCUCCAGUUACCCACUUUUAAUGACA__UGCUAAAGUUGAGCAUUAAAUAAAUAAACG_AGA
....(((((...(((............)))..)))))......................................................... (-13.05 = -12.83 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:39 2006