| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,940,190 – 6,940,283 |
| Length | 93 |
| Max. P | 0.804612 |
| Location | 6,940,190 – 6,940,283 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 87.05 |
| Mean single sequence MFE | -17.79 |
| Consensus MFE | -11.98 |
| Energy contribution | -11.97 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6940190 93 + 20766785 GGCGAACACAUCAAAAGUAAACUUGCUUCG--CUAUCGCAAAUGGAAACAUAAACAAGCGCCAAGUACGCUUGUACAUUAAACAUUAAAUUUCUA .((((.........(((....)))......--...))))..(((....)))..(((((((.......)))))))..................... ( -18.07) >DroSec_CAF1 11257 88 + 1 GGGGAACACAUCAAAAGUAAACUUGCUUCG--CUAUCGCAAAUGGAAACAUAAACAA---CCAAGUACGC--GUACAUAAAACAUUAAAUUUCUA .(((((..........((..(((((....(--(....))..(((....)))......---.)))))..))--((.......))......))))). ( -10.60) >DroEre_CAF1 8305 91 + 1 GGC--GCACAUCAAAAGCAAACUUGCUUUUUGCUAUCGCAAAUGGAAACAUAAACAAGCGCCAAGUACGC--GUACAUUUAACAUUUCAUUUCUU (((--((......((((((....))))))((((....))))(((....)))......)))))..(((...--.)))................... ( -22.60) >DroYak_CAF1 13012 89 + 1 GGC--GCACAUCAAAAGCAAACUUGCUUCU--CUAUCGCAAAUGGAAACAUAAACAAGCGCCAUGUACGC--GUACACUUAACAUUUCAUUUCUU (((--((.......(((((....)))))..--.........(((....)))......))))).((((...--.)))).................. ( -19.90) >consensus GGC__ACACAUCAAAAGCAAACUUGCUUCG__CUAUCGCAAAUGGAAACAUAAACAAGCGCCAAGUACGC__GUACAUUAAACAUUAAAUUUCUA (((...........(((((....))))).............(((....)))........)))..((((....))))................... (-11.98 = -11.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:37 2006