| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,926,396 – 6,926,500 |
| Length | 104 |
| Max. P | 0.666292 |
| Location | 6,926,396 – 6,926,500 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 89.58 |
| Mean single sequence MFE | -27.91 |
| Consensus MFE | -23.27 |
| Energy contribution | -23.93 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6926396 104 + 20766785 GUUUAGCUAGUCUUUAGCUAGCAAAGAGCGGAGGACUGAUAACAGAAACCAAUCGACAGAGAGGCUUUAGAUGCUCAAA----------ACUACAAAAUGAGCGGUUGAGCAAA (((((((((((((((.(((.......))).))))))).......(((.((..((....))..)).)))....(((((..----------.........)))))))))))))... ( -26.50) >DroSec_CAF1 617 108 + 1 GUUUAGCUAGUCUUUAGCUACCAAAGAGCUUAGGACUGAUAACAGAAACCAAUCGACAGAGAGGCUUUAGAUGCUCAAAUAAU------GCUACAAAAUGAGCGGUUGAGCAAG (((....(((((((.((((.......)))).)))))))..))).(((.((..((....))..)).)))...(((((((....(------(((........)))).))))))).. ( -28.10) >DroSim_CAF1 560 114 + 1 GUUUAGCUAGUCUUUAGCUACCAAAGAGCUUAGGACUGAUAACAGAAAGCAAUCGACAGAGAGGCUUUAGAUGCUCAAAUAAAUUACUGGCGACAAAAUGAGCGGUUGAGCAAG ((((((((((((((.((((.......)))).))))))........(((((..((....))...)))))....(((((..........((....))...)))))))))))))... ( -29.12) >consensus GUUUAGCUAGUCUUUAGCUACCAAAGAGCUUAGGACUGAUAACAGAAACCAAUCGACAGAGAGGCUUUAGAUGCUCAAAUAA_______GCUACAAAAUGAGCGGUUGAGCAAG ((((((((((((((.((((.......)))).)))))).......(((.((..((....))..)).)))....(((((.....................)))))))))))))... (-23.27 = -23.93 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:35 2006