Locus 1843

Sequence ID 2R_DroMel_CAF1
Location 6,921,117 – 6,921,227
Length 110
Max. P 0.904261
window3061

overview

Window 1

Location 6,921,117 – 6,921,227
Length 110
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 80.87
Mean single sequence MFE -32.62
Consensus MFE -28.43
Energy contribution -28.77
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.87
SVM decision value 1.03
SVM RNA-class probability 0.904261
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6921117 110 + 20766785
CUAAAGAUUCAGAUUUC--------CAUCUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCGAACAACCCGCUGUUGU
........((((((...--------.))))(((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))))(((((.....))))) ( -31.40)
>DroVir_CAF1 51656 112 + 1
CAA-AACUUCGCAUUUC-----GUAAUUUUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCGAAUAGUGCUCAUGCGC
...-.....(((((...-----(((..((((((((.((((((.......))))))....((((((.....)))))).((((.......))))....))))))))...)))..))))). ( -38.10)
>DroPse_CAF1 40686 107 + 1
UAAAAUGUAGAUAAUUC-----------UUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUACCACUGAGCUAAAGAGGCGAACAACCCGAUCGCGC
.........(((.....-----------(((((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))))........))).... ( -29.92)
>DroWil_CAF1 59083 117 + 1
GAAAA-AAAGAAAUUACUUUCGGUUUGUUUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUACCACUGAGCUAAAGAGGCGAAUAGCCCCACUGUGC
((((.-.((....))..))))((.(((((((((((.((((((.......))))))....((((((.....)))))).((((.......))))....))))))))))).))........ ( -38.00)
>DroAna_CAF1 40853 110 + 1
UUAAUUGUCACUUUUUC--------CAAUUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCGCAUAAACCGGUCUCCG
.................--------.....(((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))........(((...))) ( -28.40)
>DroPer_CAF1 41315 107 + 1
UAAAAUGUAGAUAAUUC-----------UUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUACCACUGAGCUAAAGAGGCGAACAACCCGAUCGCGC
.........(((.....-----------(((((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))))........))).... ( -29.92)
>consensus
UAAAAUGUAGAUAUUUC__________UUUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUACCACUGAGCUAAAGAGGCGAACAACCCGAUCGCGC
............................(((((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))))............... (-28.43 = -28.77 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:34 2006