Locus 1842

Sequence ID 2R_DroMel_CAF1
Location 6,918,181 – 6,918,285
Length 104
Max. P 0.966946
window3060

overview

Window 0

Location 6,918,181 – 6,918,285
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 71.92
Mean single sequence MFE -13.73
Consensus MFE -9.66
Energy contribution -10.85
Covariance contribution 1.19
Combinations/Pair 1.14
Mean z-score -1.74
Structure conservation index 0.70
SVM decision value 1.60
SVM RNA-class probability 0.966946
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6918181 104 + 20766785
AUCGAUGUUAUUAAAUUGGAAUCCCAUCUCAGUGCCAAUUCAAAAAUUCAACUAAUCUAUUAUACCCUUUAGCCCAACUAAUAAAGUGUAUAAAAAUCUUACAA
...((.(((.((.((((((...(........)..)))))).)).)))))..........((((((.(((((..........))))).))))))........... ( -10.90)
>DroSec_CAF1 33473 88 + 1
---------------UUGGAAUCCCACCUCAUUGAGAAUACAAAAUGUCAACUAAUCUAUUUUGCCCUUUAGCCCAACUAAUAAAGGGUAA-AUAAUCUUACAA
---------------.(((....)))......(((((..((.....))............(((((((((((..........))))))))))-)...)))))... ( -14.70)
>DroSim_CAF1 33846 88 + 1
---------------UUGGAAUCCCACCUCAGUGCGAAUACAUAAUAUCAACGAAUCUAUUAUACCCU-UAGCCCAACUAAUAAAGGGUAUUAUAAUCUUACAA
---------------..(((.((.(((....))).))....................(((.(((((((-(.............)))))))).))).)))..... ( -11.42)
>DroEre_CAF1 39547 104 + 1
AUCAAUGUUUUAAAAUGCAGAUCCAGCCAAAGGGCGAAUAGGAAAUUUCAACAAAUCUAGUACACCCUUUAACUCCACAAGUAAAGGGUAUAAUAAUCUUACAA
.....(((.......(((((((...(((....)))(((........))).....)))).))).((((((((.((.....))))))))))...........))). ( -17.90)
>consensus
_______________UUGGAAUCCCACCUCAGUGCGAAUACAAAAUUUCAACUAAUCUAUUAUACCCUUUAGCCCAACUAAUAAAGGGUAUAAUAAUCUUACAA
.........................................................((((((((((((((..........))))))))))))))......... ( -9.66 = -10.85 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:33 2006