Locus 1839

Sequence ID 2R_DroMel_CAF1
Location 6,905,631 – 6,905,726
Length 95
Max. P 0.816790
window3055

overview

Window 5

Location 6,905,631 – 6,905,726
Length 95
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 79.66
Mean single sequence MFE -24.62
Consensus MFE -13.52
Energy contribution -14.38
Covariance contribution 0.86
Combinations/Pair 1.24
Mean z-score -2.24
Structure conservation index 0.55
SVM decision value 0.67
SVM RNA-class probability 0.816790
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6905631 95 - 20766785
UUU-----CUCGGGGGAGGUU----CAUCAAUGGUAAUAGCAACUAUAAAUAGUUCCAGUAAAUUGGCCAUAACCAAAAGGCUGAACAAACAGCUCCCA----CCG----AA
...-----.(((((((((...----.....(((((.......))))).....((((.(((...((((......))))...)))))))......))))).----)))----). ( -27.50)
>DroPse_CAF1 21837 94 - 1
------------GGAGAGGCUGCCGUAGCAAUAAUACU-GUAUCUAUAAAUAGUGCCAGUAAAUUGGCCAUAAC-AAAUGGCUGAACAAAUAGUUUGCAUUGCCCA----AA
------------...(.((((((...(((.....((((-(...(((....)))...)))))..(..(((((...-..)))))..).......))).)))..)))).----.. ( -22.00)
>DroSec_CAF1 21123 94 - 1
UU------CUCGGGGGAGUUU----UGUCAAUGGUAAUAGCAACUAUAAAUAGCUACAGCAAAUUGGCCAUAACCAAAUGGCUGAACAAACAGCUCCCA----CCG----AA
..------.((((((((((((----(((.....((..((((...........))))..))...(..(((((......)))))..))))))..)))))).----)))----). ( -31.70)
>DroSim_CAF1 25186 95 - 1
UUG-----CUCGGGGUAGGUU----CAUCAAUGGUAAUAGCAACUAUAAAUAGUAUCAGUAAAUUGGCCAUAACCAAAUGGCUGAACAAACAGCUCCCA----CCG----AA
...-----.((((((.((...----.....(((((.......))))).....((.(((((...((((......))))...)))))))......)).)).----)))----). ( -20.70)
>DroEre_CAF1 26050 95 - 1
UUU-----UUCGGGGGAGGCG----CAUCAAUGGUAAUAACAGCUAUAAAUAGUUCCAGUAAAUUGGCCAUAACCAAAAGGCUGAACAAAUAGCUCCCA----GCG----AA
...-----((((.(((((.(.----.....(((((.......))))).....((((.(((...((((......))))...))))))).....)))))).----.))----)) ( -24.40)
>DroYak_CAF1 26724 104 - 1
UUUUUUUCUUCGGGGGAGGUG----CAUCAAUGGUAAUAGCAACUAUAAAUAGUUCCAGUAAAUUGGCCAUAACCAAAAGGCUGAACAAACAGCUCGCA----AGGCUUCAA
.((((..(....)..))))..----.....(((((.......))))).....((((.(((...((((......))))...)))))))....(((.(...----.)))).... ( -21.40)
>consensus
UUU_____CUCGGGGGAGGUU____CAUCAAUGGUAAUAGCAACUAUAAAUAGUUCCAGUAAAUUGGCCAUAACCAAAAGGCUGAACAAACAGCUCCCA____CCG____AA
.............(((((............(((((.......))))).....(((.((((...((((......))))...)))))))......))))).............. (-13.52 = -14.38 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:28 2006