Locus 1833

Sequence ID 2R_DroMel_CAF1
Location 6,880,888 – 6,881,008
Length 120
Max. P 0.560731
window3041

overview

Window 1

Location 6,880,888 – 6,881,008
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 86.16
Mean single sequence MFE -25.00
Consensus MFE -21.56
Energy contribution -22.56
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.50
Structure conservation index 0.86
SVM decision value 0.05
SVM RNA-class probability 0.560731
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6880888 120 - 20766785
CACACGCAGCAGCGACGUCUCCGCCUCUGUGCCCCUCGGUCCCUCUCUCACUCACUCUUUUGGCACAGCACAAGUCCUGGCGGCCGGCUCUUGCUCUACCUCCCCCCACCACCAACUUCC
.....(.(((((.((.(((.(((((.(((((((....(((.............))).....)))))))..........)))))..)))))))))))........................ ( -25.82)
>DroSim_CAF1 554 113 - 1
CACUCGCAGCAGCGACGUCUCCGCCUCUGUGCCCCUCGCUCCCUCUCUCACUCACUCUUUUGGCACAGCACAAGUCCUGGCGGCCGGCUCUUGCUCUACCCCCU-------CCAACCUCC
.....(.(((((.((.(((.(((((.(((((((............................)))))))..........)))))..)))))))))))........-------......... ( -24.99)
>DroEre_CAF1 1636 102 - 1
CACUCGCAGCAGCGACGUCUCCGCCUCUGUGCCCCUCUGUCCCUCUCUCACUCACUCUUUUGGCA-----CAAGUCCUGGCGGCCGGCUCUUGCUCUACCUCCCC-------------CC
.....(.(((((.((.(((.(((((.(((((((............................))))-----).))....)))))..))))))))))).........-------------.. ( -24.19)
>consensus
CACUCGCAGCAGCGACGUCUCCGCCUCUGUGCCCCUCGGUCCCUCUCUCACUCACUCUUUUGGCACAGCACAAGUCCUGGCGGCCGGCUCUUGCUCUACCUCCCC______CCAAC_UCC
.....(.(((((.((.(((.(((((.(((((((............................)))))))..........)))))..)))))))))))........................ (-21.56 = -22.56 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:15 2006