| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,873,460 – 6,873,566 |
| Length | 106 |
| Max. P | 0.664256 |
| Location | 6,873,460 – 6,873,566 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 80.33 |
| Mean single sequence MFE | -33.47 |
| Consensus MFE | -29.35 |
| Energy contribution | -29.52 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6873460 106 + 20766785 CA---UUAAU---AU-----UCGCCCCCCAGGUGGAAUCGAACCACUUCGACGCAAAUCGACUACGGAUUUGAAGUCCGCACCCCGGACCACCGAAGUUCAGUGGGGCAUUUA--GUGU ((---((((.---..-----..(((((.(.(((........)))((((((...((((((.......))))))..(((((.....)))))...))))))...).)))))..)))--))). ( -34.00) >DroVir_CAF1 1586 109 + 1 CAUCAAAUAG---AA-----UCGCCCCCCAGGUGGAAUCGAACCACUUCGACGUUAAUCGACUGCGGAUUUGAAGUCCGCACCCCGGACCACCGAAGCUCAGUGGGGCAUCAU--UCGU .........(---((-----(.(((((.(.(((((..(((((....)))))......(((..(((((((.....)))))))...))).)))))(.....).).)))))...))--)).. ( -35.80) >DroGri_CAF1 1865 116 + 1 AUUAAACAUG---CCGCUGAUCGCCCCCCAGGUGGAAUCGAACCACUUCGACGUUAAUCGACUACGGAUUUGAAGUCCGCACCCCGGACCACCGAAGCUCAGUGGGGCGGCAGUCCUCA ..........---..((((.(((((((.(.(((((..(((((((...((((......))))....)).)))))..((((.....)))))))))(.....).).)))))))))))..... ( -37.80) >DroMoj_CAF1 1584 113 + 1 GUUUAAAUUG---CAGUUU-ACGCCCCCCAGGUGGAAUCGAACCACUUCGACGUUAAUCGACUACGGAUUUGAAGUCCGCACCCCGGACCACCGAAGCUCAGUGGGGCAGAUU--UUUA ..........---......-..(((((.(.(((((..(((((((...((((......))))....)).)))))..((((.....)))))))))(.....).).))))).....--.... ( -30.60) >DroAna_CAF1 1342 99 + 1 -------------CA-----UCGCCCCCCAGGUGGAAUCGAACCACUUCGACGCUAAUCGACUACGGAUUUGAAGUCCGCACCCCGGACCACCGAAGCUCAGUGGGGCACUUC--UAUU -------------..-----..(((((.(.(((((..(((((((...((((......))))....)).)))))..((((.....)))))))))(.....).).))))).....--.... ( -30.60) >DroPer_CAF1 1451 112 + 1 CUCCUCUUCUGUAAG-----UCGCCCCACAGGUGGAAUCGAACCACUUCGACGCUAAUCGACUACGGAUUUGAAGUCCGCACCCCGGACCACCGAAGCUCAGUGAGGCAACAU--UGCA ..........(((((-----(.(((.(((.(((((..(((((((...((((......))))....)).)))))..((((.....)))))))))(.....).))).))).)).)--))). ( -32.00) >consensus CUU_AAAUAG___AA_____UCGCCCCCCAGGUGGAAUCGAACCACUUCGACGCUAAUCGACUACGGAUUUGAAGUCCGCACCCCGGACCACCGAAGCUCAGUGGGGCAGCAU__UUCA ......................(((((.(.(((((..(((((((...((((......))))....)).)))))..((((.....)))))))))(.....).).)))))........... (-29.35 = -29.52 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:14 2006