| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,439,895 – 1,440,055 |
| Length | 160 |
| Max. P | 0.949333 |
| Location | 1,439,895 – 1,440,015 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.75 |
| Mean single sequence MFE | -30.95 |
| Consensus MFE | -30.34 |
| Energy contribution | -30.15 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1439895 120 - 20766785 AAGCCCAGACAAGAGAUUUAUGCGCUUGCCAAGCUGCAAGCAAGCAAACGGACAGCAAUUAAUUUGCAUUCUGGUAAUUAAUUUUGCAUUUCUCCAGUCCUCUUUUUUCCGCUGCUGCUG .(((.(((..((((((....(((((((((......))))))..)))...((((.((((.....))))......((((......)))).........)))))))))).....)))..))). ( -30.50) >DroSec_CAF1 57140 120 - 1 AAGCCCAGACAAGAGAUUUAUGCGCUUGCCAAGCUGCAAGCAAGCAAACGGACAGCAAUUAAUUUGCAUUCUGGUAAUUAAUUUUGCAUUUCUCCAGUCCUCUUUUUUCCGCUGCUGCUG .(((.(((..((((((....(((((((((......))))))..)))...((((.((((.....))))......((((......)))).........)))))))))).....)))..))). ( -30.50) >DroEre_CAF1 56751 119 - 1 AAGCCCAGACAAGAGAUUUAUGCGCUUGCCAAGCUGCAAGCAAGCAAACGGACAGCAAUUAAUUUGCAUUCUGGUAAUUAAUUUUGCAUUUCUCCAGUCCUCUUUUUU-UGCUGCUGCUG .(((.(((.(((((((....(((((((((......))))))..)))...((((.((((.....))))......((((......)))).........))))...)))))-)))))..))). ( -33.00) >DroYak_CAF1 61675 120 - 1 AAGCCCAGACAAGAGAUUUAUGUGCUUGCCAAGCUGCAAGCAAGCAAACGGACAGCAAUUAAUUUGCAUUCUGGUAAUUAAUUUUGCAUUUCUCCAGUCCUCUUUUUUCCGCUGCUGCUG .(((.(((..((((((......(((((((......))))))).......((((.((((.....))))......((((......)))).........)))))))))).....)))..))). ( -29.80) >consensus AAGCCCAGACAAGAGAUUUAUGCGCUUGCCAAGCUGCAAGCAAGCAAACGGACAGCAAUUAAUUUGCAUUCUGGUAAUUAAUUUUGCAUUUCUCCAGUCCUCUUUUUUCCGCUGCUGCUG .(((.(((..((((((....(((((((((......))))))..)))...((((.((((.....))))......((((......)))).........)))))))))).....)))..))). (-30.34 = -30.15 + -0.19)
| Location | 1,439,935 – 1,440,055 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.78 |
| Mean single sequence MFE | -39.95 |
| Consensus MFE | -39.95 |
| Energy contribution | -39.82 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.30 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.949333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1439935 120 + 20766785 UAAUUACCAGAAUGCAAAUUAAUUGCUGUCCGUUUGCUUGCUUGCAGCUUGGCAAGCGCAUAAAUCUCUUGUCUGGGCUUCAGCCAUCGCUGACGAUUGCCCCUGGGGAAGGAUAGCAAC ......................((((((((((((((((.((.....))..))))))).......(((((.....((((.(((((....))))).....))))..))))).))))))))). ( -41.60) >DroSec_CAF1 57180 120 + 1 UAAUUACCAGAAUGCAAAUUAAUUGCUGUCCGUUUGCUUGCUUGCAGCUUGGCAAGCGCAUAAAUCUCUUGUCUGGGCUUUAGCCAUCGCUGACGAUUGCCCCUGGGGAAGGAUUGCAAC ......................((((.(((((((((((.((.....))..))))))).......(((((.....((((.(((((....))))).....))))..))))).)))).)))). ( -35.20) >DroEre_CAF1 56790 120 + 1 UAAUUACCAGAAUGCAAAUUAAUUGCUGUCCGUUUGCUUGCUUGCAGCUUGGCAAGCGCAUAAAUCUCUUGUCUGGGCUUCAGCCAUCGCUGACGAUUGCCCCCGGGGAAGGAUAGCAAC ......................((((((((((((((((.((.....))..))))))).......(((((.(...((((.(((((....))))).....))))).))))).))))))))). ( -41.00) >DroYak_CAF1 61715 120 + 1 UAAUUACCAGAAUGCAAAUUAAUUGCUGUCCGUUUGCUUGCUUGCAGCUUGGCAAGCACAUAAAUCUCUUGUCUGGGCUUCAGCCAUCGCUGACGAUUGCCCCCGGGGAAGGAUAGCAAU .....................((((((((((...((((((((........))))))))......(((((.(...((((.(((((....))))).....))))).))))).)))))))))) ( -42.00) >consensus UAAUUACCAGAAUGCAAAUUAAUUGCUGUCCGUUUGCUUGCUUGCAGCUUGGCAAGCGCAUAAAUCUCUUGUCUGGGCUUCAGCCAUCGCUGACGAUUGCCCCCGGGGAAGGAUAGCAAC ......................(((((((((...((((((((........))))))))......(((((.....((((.(((((....))))).....))))..))))).))))))))). (-39.95 = -39.82 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:35 2006