Locus 1827

Sequence ID 2R_DroMel_CAF1
Location 6,843,036 – 6,843,142
Length 106
Max. P 0.892944
window3034

overview

Window 4

Location 6,843,036 – 6,843,142
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -21.60
Consensus MFE -18.96
Energy contribution -19.32
Covariance contribution 0.36
Combinations/Pair 1.09
Mean z-score -1.50
Structure conservation index 0.88
SVM decision value 0.97
SVM RNA-class probability 0.892944
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6843036 106 + 20766785
UUAAAUGACUUGGAUGAUUUUCACAAAUUGAAAGUUAUUUUUAUCCGGCAUUAGAAAGCAAGCCAUUGAAAGUUUAACUGUUUCAAUGGGCUAAUAAUGAACCCUU
......((...((((((((((((.....))))))))))))...)).(((((((...(((...(((((((((.........))))))))))))..)))))..))... ( -22.80)
>DroSec_CAF1 15956 106 + 1
UUAAAUGACUUGGGUGAUUUUCACAAAUUGAAAGUUAUUUUUAUCCGGCAUUAGAAAGCAAGCCAUUGAAAGUUUAACUGUUUCAAUGGGCUAAUAAUGAACCCUU
...........((((((((((((.....))))))))............(((((...(((...(((((((((.........))))))))))))..))))).)))).. ( -24.40)
>DroSim_CAF1 14416 106 + 1
UUAAAUGACUUGGGUGAUUUUCACAAAUUGAAAGUUAUUUUUAUCCGGCAUUAGAAAGCAAGCCAUUGAAAGUUUAACUGUUUCAAUGGGCUAAUAAUGAACCCUU
...........((((((((((((.....))))))))............(((((...(((...(((((((((.........))))))))))))..))))).)))).. ( -24.40)
>DroEre_CAF1 17624 106 + 1
UUAAAUGACUUGUUUCAUUUUCACAAAUUGAAAGUUAUUUUCAUGCCGCAUUAGAAAGCAAACCAUUGAAAGUUUAACUGUUUCAAUCGGCUAAUAAUGAACCCUU
..(((((((((...(((...........))))))))))))(((((((((........)).....(((((((.........))))))).))).....))))...... ( -14.00)
>DroYak_CAF1 16827 106 + 1
UCAAAUGACUUGGAUAAUUUUCACAAAUUGAAAGUUAUUUUUAUCCCGCAUUAGAAAGCCAGCCAUUGAAAGUUUAACUGUUUCAAUGGGCUAAUAAUGAACACUU
......((...((((((((((((.....))))))))))))...))...(((((...((((...((((((((.........))))))))))))..)))))....... ( -22.40)
>consensus
UUAAAUGACUUGGAUGAUUUUCACAAAUUGAAAGUUAUUUUUAUCCGGCAUUAGAAAGCAAGCCAUUGAAAGUUUAACUGUUUCAAUGGGCUAAUAAUGAACCCUU
....((((...((((((((((((.....))))))))))))))))....(((((...(((...(((((((((.........))))))))))))..)))))....... (-18.96 = -19.32 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:08 2006