Locus 1810

Sequence ID 2R_DroMel_CAF1
Location 6,787,657 – 6,787,761
Length 104
Max. P 0.839658
window3001

overview

Window 1

Location 6,787,657 – 6,787,761
Length 104
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 85.17
Mean single sequence MFE -31.14
Consensus MFE -22.82
Energy contribution -23.58
Covariance contribution 0.76
Combinations/Pair 1.11
Mean z-score -2.05
Structure conservation index 0.73
SVM decision value 0.75
SVM RNA-class probability 0.839658
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6787657 104 + 20766785
CGGAUAUGCUAAGUGCAAUGGGGAAACCCUUGGCUGUGCUAAAAUAUCCAAGAUGGGACACUCCAGUGGCCUAUUGUUUAGGCAUGUUCUUU------UUCGCGGAAUUU
.(((((((((.((..((..(((....))).....))..))...........((((((.(((....))).)))))).....)))))))))...------............ ( -32.90)
>DroSec_CAF1 37804 102 + 1
CGGAUAUGCUAAGUGCAAUGAGGAAACCCUUGUCUAU--UUAGCACUCCAAGAUGGGACACUCCAGUGGCCUAUUUUUUAGGCAUGUUCUUU------UUCACAGAAUUU
.(((((((((.(((((.(..(((....)))..)....--...)))))..((((((((.(((....))).))))))))...)))))))))...------............ ( -29.00)
>DroSim_CAF1 46728 102 + 1
CGGAUAUGCUAAGUGCAAAGGGGAAACCCUUGGCUAU--UUAGCACUCCAAGAUGGGACACUCCAGUGGCCUAUUGUUUAGGCAUGUUCUUU------UUCGCGGAAUUU
......((((((((((.(((((....))))).)).))--)))))).(((..((.(((((((......)(((((.....))))).))))))..------.))..))).... ( -37.90)
>DroEre_CAF1 40254 108 + 1
CGGAUAUGCUAAGUGCAGUGGGGAAACCCUUGGCUAU--CUAACACUCCAAGAUGGGACACUCCACUGGUCUAUUGUUUAAACAUGUUCUUGGAACUCAACGUGGAAUUU
.(((((.(((((.......(((....)))))))))))--))..((((((((((..((((.(......)))))..(((....)))...))))))).......)))...... ( -27.02)
>DroYak_CAF1 45568 99 + 1
UGGAUAUGCUAAGUGCAAUGGGGAAACCCUUGGCUAU--UUAGCACUCCAAGAUGGGACACUCCACUGGUCUAUUGUUUGAACACGUUCUUU------UUCGCAGAA---
((((..((((((((((...(((....)))...)).))--)))))).))))((((.((........)).)))).((((..(((........))------)..))))..--- ( -28.90)
>consensus
CGGAUAUGCUAAGUGCAAUGGGGAAACCCUUGGCUAU__UUAGCACUCCAAGAUGGGACACUCCAGUGGCCUAUUGUUUAGGCAUGUUCUUU______UUCGCGGAAUUU
.(((((((((.(((.(((.(((....)))))))))................((((((.(((....))).)))))).....)))))))))..................... (-22.82 = -23.58 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:38 2006