Locus 1804

Sequence ID 2R_DroMel_CAF1
Location 6,758,510 – 6,758,605
Length 95
Max. P 0.944886
window2994

overview

Window 4

Location 6,758,510 – 6,758,605
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 87.37
Mean single sequence MFE -18.85
Consensus MFE -15.19
Energy contribution -16.30
Covariance contribution 1.11
Combinations/Pair 1.05
Mean z-score -3.08
Structure conservation index 0.81
SVM decision value 1.35
SVM RNA-class probability 0.944886
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6758510 95 - 20766785
UAUACACGGAGAAAAAUAAAUCUUACAUUUCUAGCUGCUUACAAAUAUUCAACGUCAUUGAAAAAGAAUAUCGAUGAAUAAUUUGAAGUAGCUUC
........((((........))))........((((((((.((((((((((.((..(((.......)))..)).))))).))))))))))))).. ( -19.60)
>DroSec_CAF1 9351 95 - 1
UAUACACACAAAAAAAUAAAUCAUACAUUUCAAGCUGCUUACAAAUAUUCAUAGUCAUUGAAGAAGAACAGAGAUGAAUAAUUCUAGGUAGCUUC
...............................((((((((((.((.(((((((..((..............)).))))))).)).)))))))))). ( -17.04)
>DroSim_CAF1 12030 95 - 1
UAUACACAGAAAAAAAUAAAUCCCACAAUUCAAGCUGCUUACAAAUAUUCAUCGUCAUUGAAGAAGAAUAAAGAUGAAUAAUUUUAGGUAGCUUU
...............................((((((((((.((.((((((((...(((.......)))...)))))))).)).)))))))))). ( -19.90)
>consensus
UAUACACAGAAAAAAAUAAAUCAUACAUUUCAAGCUGCUUACAAAUAUUCAUCGUCAUUGAAGAAGAAUAAAGAUGAAUAAUUUUAGGUAGCUUC
...............................((((((((((.((.((((((((.((.........)).....)))))))).)).)))))))))). (-15.19 = -16.30 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:31 2006