Locus 1801

Sequence ID 2R_DroMel_CAF1
Location 6,747,483 – 6,747,585
Length 102
Max. P 0.693839
window2990

overview

Window 0

Location 6,747,483 – 6,747,585
Length 102
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 85.16
Mean single sequence MFE -30.88
Consensus MFE -25.01
Energy contribution -25.13
Covariance contribution 0.12
Combinations/Pair 1.15
Mean z-score -1.87
Structure conservation index 0.81
SVM decision value 0.34
SVM RNA-class probability 0.693839
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6747483 102 + 20766785
AACUUGGUAAAGGUAUUAUUUUGGACAGCUUU-CCGUACUUUCAAGGCAAUUCCCUGUG-GGGGCUUGUUGCAUUUGCCACUAUUACUGCUGUCAAUCAGCCAA
.....(((((.(((........(((......)-))..........(((((..(((....-)))((.....))..)))))))).)))))((((.....))))... ( -24.90)
>DroSec_CAF1 6921 103 + 1
GACUUGUAAAAGGUAUGAUUUUGGACAGCUUU-UCUUACUUUCGAGGCAAUUCCCCGUGCGGGGGUUGUUGCAUUUGCCACUAUGACUGCUGUCAAUCAGCCAA
...........(((.(((((...((((((...-((.......((((((((((((((....)))))..))))).)))).......))..)))))))))))))).. ( -30.84)
>DroEre_CAF1 7205 101 + 1
GACUAGGUAAAGGU-UGAUUUCGGAUAGUUUAGCCGCACUUUGAAGGCAAUCCCCUGUG--GGGGUUGCUGCAUUUGCCACUAUUACUGCUGUCAAUCAGCCAA
...........(((-(((((.(((.((((.(((..(((...((..((((((((((...)--))))))))).))..)))..)))..)))))))..)))))))).. ( -36.90)
>consensus
GACUUGGUAAAGGUAUGAUUUUGGACAGCUUU_CCGUACUUUCAAGGCAAUUCCCUGUG_GGGGGUUGUUGCAUUUGCCACUAUUACUGCUGUCAAUCAGCCAA
...........(((.(((((...((((((................((((((((((.....))))))))))((....))..........)))))))))))))).. (-25.01 = -25.13 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:27 2006