Locus 1800

Sequence ID 2R_DroMel_CAF1
Location 6,747,151 – 6,747,259
Length 108
Max. P 0.643122
window2989

overview

Window 9

Location 6,747,151 – 6,747,259
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 86.73
Mean single sequence MFE -34.20
Consensus MFE -27.38
Energy contribution -28.50
Covariance contribution 1.12
Combinations/Pair 1.17
Mean z-score -1.94
Structure conservation index 0.80
SVM decision value 0.23
SVM RNA-class probability 0.643122
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6747151 108 - 20766785
GUGAGAAGGUAGUGCUUGUACACGAUGGUGGUAGUUUAGACAACGGUUGAUAUCCUGUGGUUUAAACUUACCACCCUCUGGAAUAAAAUAACCUCAAAUGGCGCUGCA
........((((((((.......((.(((((((((((((((.((((........)))).)))))))).))))))).)).((..........))......)))))))). ( -35.90)
>DroSec_CAF1 6597 108 - 1
GUGCGAAGGCAGUGCUUGUACACGAUGGUGGUAGUUUAAGCAUCGGUUGAUAUCCUGUGGCUUAAACUUACCACCCUCUGGAAUAAAAUACCCUCAAAUGGGGCUGCA
........(((((..((((.((.((.(((((((((((((((..(((........)))..)))))))).))))))).))))..))))....(((......)))))))). ( -38.80)
>DroEre_CAF1 6935 105 - 1
GUGAGAAG-CACUGCCUGUACACGAUGGUGGUGGCUUA-GCAUCGGUUGAUAUCCUGUAGUUAAAACCCACCACCCCCUGGAAUAAA-GACCCUCAACUGGGGCUGCA
.......(-((..(((....((.(..((((((((.(((-((((.((.......)).)).)))))...))))))))..))).......-...((......)))))))). ( -27.90)
>consensus
GUGAGAAGGCAGUGCUUGUACACGAUGGUGGUAGUUUA_GCAUCGGUUGAUAUCCUGUGGUUUAAACUUACCACCCUCUGGAAUAAAAUACCCUCAAAUGGGGCUGCA
........(((((.......((.((.(((((((((((((((..(((........)))..)))))))).))))))).))))..........(((......)))))))). (-27.38 = -28.50 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:26 2006