Locus 180

Sequence ID 2R_DroMel_CAF1
Location 1,436,837 – 1,436,957
Length 120
Max. P 0.749608
window406

overview

Window 6

Location 1,436,837 – 1,436,957
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.17
Mean single sequence MFE -40.98
Consensus MFE -39.16
Energy contribution -39.60
Covariance contribution 0.44
Combinations/Pair 1.14
Mean z-score -1.51
Structure conservation index 0.96
SVM decision value 0.47
SVM RNA-class probability 0.749608
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1436837 120 + 20766785
GCUAUAACCUCGGAGAAGAUCAGCUCCGCCAGAAGUUUGGUCAUAUCCCCAUUUGCCCUCACGUCCAUGCUUUCUAUGGUCUUUCUGGGAGCGCGCGGUAGCACUUCUGGCGAGAUGAAC
........(((((((........))))(((((((((.(((........)))...((.((((.(.(((((.....))))).)....)))).))((......))))))))))))))...... ( -36.80)
>DroSec_CAF1 54210 120 + 1
GCUAUAACCUCGGAGAAGAUCAGCUCCGCCAGAAGUUUGGUCAUAUCCCCGUUUGCUCUCACAUCCAUGCUUUCUAUGGUCUUUCUGGGGGCGCGCGGUAGCACUUCUGGCGAGAUGAAC
........(((((((........))))(((((((((..((......))((((.((((((((...(((((.....)))))......)))))))).))))....))))))))))))...... ( -44.50)
>DroEre_CAF1 53380 120 + 1
GCUAUAACCUCGGAGAAAAUCAGCUCCGCCAGGAGUUUGGUCAUAUCCCCGUUUGCCCUCACGUCAAUGCUUUCUAUGGUCUUCCUGGGCGCGCGCGGUAGUACUUCUGGCGAGAUGAAC
........(((((((........))))(((((((((..((......))((((.(((.((((.(.....(((......)))...).)))).))).))))....))))))))))))...... ( -37.20)
>DroYak_CAF1 58398 120 + 1
GCUAUUACCUCAGAGAAAAUCAGCUCCGCCAGAAGUUUGGUCAUAUCCCCGUUCGCCCUCACGUCCAUGCUUUCUAUGGUUUUUCUGGGGGCGCGCGGUAGCACUUCUGGCGAGAUGAAC
...................(((.(((.(((((((((..((......))((((.((((((((...(((((.....)))))......)))))))).))))....)))))))))))).))).. ( -45.40)
>consensus
GCUAUAACCUCGGAGAAAAUCAGCUCCGCCAGAAGUUUGGUCAUAUCCCCGUUUGCCCUCACGUCCAUGCUUUCUAUGGUCUUUCUGGGGGCGCGCGGUAGCACUUCUGGCGAGAUGAAC
........(((((((........))))(((((((((..((......))((((.((((((((.(.(((((.....)))))....).)))))))).))))....))))))))))))...... (-39.16 = -39.60 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:23 2006