Locus 1793

Sequence ID 2R_DroMel_CAF1
Location 6,710,257 – 6,710,348
Length 91
Max. P 0.600289
window2977

overview

Window 7

Location 6,710,257 – 6,710,348
Length 91
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 75.85
Mean single sequence MFE -36.60
Consensus MFE -25.73
Energy contribution -26.85
Covariance contribution 1.12
Combinations/Pair 1.16
Mean z-score -1.48
Structure conservation index 0.70
SVM decision value 0.13
SVM RNA-class probability 0.600289
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6710257 91 - 20766785
CGCUUUUGGGAGUCGCCAACCAGGAGGAGGAGGUUGCCUCUCCAAGCGAUGGA---------------AGGGGCUGUGCCAGGGGAGUUCCAGAAGGGGU--GAGUAG
(.(((((((((.((.((..((....))....(((.(((((((((.....))).---------------))))))...))).)).)).))))))))).)..--...... ( -38.80)
>DroSec_CAF1 58724 86 - 1
CGCUUUUGGGAGUCGCCAACCAGGCGGAGGAGG---CUUCUCCAAGCGAUGGA---------------AGGGGCAGUGCCAGGGGUGUUCCAGGGGGU----GGGGAG
((((((..((((.((((..((.((((......(---((((((((.....))).---------------))))))..)))).))))))))))..)))))----)..... ( -32.40)
>DroSim_CAF1 65525 88 - 1
CGCUUUUGGGAGUCGCCAACCAGGCGGAGGAGG---CUUCUCCAAGCGAUGGA---------------ACGGGCAGUGCCAGGGGUGUUCCAGGGGGUUU--GGGGGG
.((((((.....(((((.....))))).)))))---).(((((((((..((((---------------((((((...))).....)))))))....))))--))))). ( -33.90)
>DroYak_CAF1 59562 100 - 1
CGCUUUUGGGAGUCGCCAACU-GGAGGAGGAGG---CUCCUCCACACGAUGGGGGUGCUCAGGGGCGGAGGGACUGUGCCAGGGGAGUUCCAG----GGGAAGGGGGU
((((((((((..((.(((.((-(((((((....---))))))))...).))).))..))))))))))..((((((.(......).))))))..----........... ( -41.30)
>consensus
CGCUUUUGGGAGUCGCCAACCAGGAGGAGGAGG___CUUCUCCAAGCGAUGGA_______________AGGGGCAGUGCCAGGGGAGUUCCAGGGGGGGU__GGGGAG
..(((((((((.((.((..(((...(((((((....)))))))......)))..................((......)).)).)).)))))))))............ (-25.73 = -26.85 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:15 2006