| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,704,434 – 6,704,525 |
| Length | 91 |
| Max. P | 0.962455 |
| Location | 6,704,434 – 6,704,525 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 80.35 |
| Mean single sequence MFE | -21.75 |
| Consensus MFE | -15.87 |
| Energy contribution | -17.03 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6704434 91 + 20766785 ACACAUUCACUAGUGAAUAAG----CUGAAUAAACUGAAUAAGCUGGUAAACUGGUUGCAA-----GUCGUAACCAGUUUUCUCGAGCAAAAAU-AAUUCA ....(((((....)))))...----.................(((.(.(((((((((((..-----...)))))))))))...).)))......-...... ( -23.30) >DroSec_CAF1 53027 91 + 1 ACACAUUCACUAGUGAAUAAG----CUGAAUAAACUGAAUAAGCUGGUAAACUGGUUGCAA-----GUCGUAACCAGUUUUCUCGAGCAAAAAU-AAUUCA ....(((((....)))))...----.................(((.(.(((((((((((..-----...)))))))))))...).)))......-...... ( -23.30) >DroSim_CAF1 59769 91 + 1 ACACAUUCACUAGUGAAUAAG----CUGAAUAAACUGAAUAAGCUGGUAAACUGGUUGCAA-----GUCUUAACCAGUUUUCUCGAGCAAAAAU-AAUUCA ....(((((....)))))..(----((((..((((((..((((((.((((.....)))).)-----).))))..))))))..)).)))......-...... ( -19.60) >DroEre_CAF1 54786 91 + 1 ACACAUUCGCUAGUGAAUAAA----CUGAAUAAAGUGAAUAAGCUGGAAAACUGGUUGCAA-----CUCGUAACCAGUUUUGUCGAGCAAAAAU-AAUUCA ....((((((((((......)----))......)))))))..(((.(((((((((((((..-----...)))))))))))..)).)))......-...... ( -26.80) >DroYak_CAF1 53525 82 + 1 UCACGUUCACUAGUGAGUAAA----CUGA---------AUAAGCUGGUAAACUGGUUGCAA-----CUCGUAACCAGUUUUCUCGAGCAAAAAU-AAUUCA (((.(((.(((....))).))----))))---------....(((.(.(((((((((((..-----...)))))))))))...).)))......-...... ( -24.20) >DroAna_CAF1 50284 92 + 1 ACACA-----GAGAGAAAGAGACACUUGCACACAUUCAAUAAAC----AAACUGGUUGCAGUCAGCCUCCUAACCAGUUUUCUCGGCCAAAAAAAAAUAAA .....-----(((((.(((.....))).)...............----(((((((((((.....)).....)))))))))))))................. ( -13.30) >consensus ACACAUUCACUAGUGAAUAAG____CUGAAUAAACUGAAUAAGCUGGUAAACUGGUUGCAA_____CUCGUAACCAGUUUUCUCGAGCAAAAAU_AAUUCA .(((........)))...........................(((.(.(((((((((((..........)))))))))))...).)))............. (-15.87 = -17.03 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:11 2006