Locus 1788

Sequence ID 2R_DroMel_CAF1
Location 6,697,110 – 6,697,203
Length 93
Max. P 0.969026
window2972

overview

Window 2

Location 6,697,110 – 6,697,203
Length 93
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 72.58
Mean single sequence MFE -25.17
Consensus MFE -11.11
Energy contribution -11.55
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -2.16
Structure conservation index 0.44
SVM decision value 1.64
SVM RNA-class probability 0.969026
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6697110 93 - 20766785
GCUUGCAUUGUCAAUAUGUUUUUUUUUUUUCACCGUGCACCUAAGCAGCCAG----UUAACUGCAACCACUUGGCUGGCUGGUCGGUUGCAGCCACA
((..((((.......))))................((((.(..(.(((((((----((((.((....)).))))))))))).)..).)))))).... ( -26.00)
>DroSec_CAF1 45755 84 - 1
GCUUGCAUUCCCAGUAUGUUUU-----UUUCAUCGUGCACCUAAGCAGCUAG----CCAACUGCAACCACUUGGCUG----CUUGGUUGCAGCCACA
(((.(((......(((((....-----......)))))..((((((((((((----..............)))))))----))))).)))))).... ( -24.04)
>DroSim_CAF1 50992 86 - 1
GCUUGCAUUCCCAGUAUGUU-------UUUCAUCGUGCACCUAAGCAGCUAGUCAGUCAACUGCAACCACUUGGCUG----CUUGGUUGCAGCCACA
(((.(((......(((((..-------......)))))..((((((((((((((((....))).....)).))))))----))))).)))))).... ( -27.50)
>DroEre_CAF1 47518 73 - 1
------GCAUGCUAUGUGGU-U-----UCUCGCCGUGCACUUAAGCAGC--------CAAAAGCAGCCACUUGGCUG----GCUGGUUGCAGCCACA
------........((((((-(-----....((...))......(((((--------((....(((((....)))))----..)))))))))))))) ( -26.90)
>DroYak_CAF1 46108 72 - 1
------AUGUUCAAUGUGGU-U-----UUUCGCCGUGCACUAAAGCAGC--------CAACUGCAA-CACUUGGCUG----GUCGGUUGCAGCCACA
------........((((((-(-----....((...))......(((((--------(.(((((..-......)).)----)).))))))))))))) ( -21.40)
>consensus
GCUUGCAUUCCCAAUAUGUU_U_____UUUCACCGUGCACCUAAGCAGC_AG_____CAACUGCAACCACUUGGCUG____GUUGGUUGCAGCCACA
...................................(((......))).............((((((((................))))))))..... (-11.11 = -11.55 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:10 2006