Locus 1784

Sequence ID 2R_DroMel_CAF1
Location 6,681,285 – 6,681,405
Length 120
Max. P 0.681496
window2966

overview

Window 6

Location 6,681,285 – 6,681,405
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.51
Mean single sequence MFE -24.76
Consensus MFE -16.19
Energy contribution -16.39
Covariance contribution 0.20
Combinations/Pair 1.09
Mean z-score -1.67
Structure conservation index 0.65
SVM decision value 0.31
SVM RNA-class probability 0.681496
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6681285 120 + 20766785
GCACUUCAACGAAAGUCCAAAGUUGGCCAAAAGGAAACAGUUCGUUUGGCUCCUUUGCAUUUCGCCUGCCCUGAGCAGUUAAUAAAGGCGUUUAAAAAUAGAUGCUAUAGAUAAUGCUCC
(((..((..(((((...(((((..(((((((.(((.....))).))))))).)))))..))))).((((.....))))........((((((((....))))))))...))...)))... ( -31.30)
>DroSec_CAF1 29757 97 + 1
ACACUUCAGCGAAAGUCAAAAGUUGGCCAAAGGGAAACAGUUCGUUU-----------------------CUGAGCAGUUAAUAAAGGCGUUUAAAAAUAGAUGCAAUAAAUAAUGCUCC
.(((((..((....))...))).)).......((((((.....))))-----------------------))(((((..........(((((((....))))))).........))))). ( -21.41)
>DroSim_CAF1 32836 97 + 1
ACACUUCAACGAAAGUCAAAAGUUGGCCAAAGGGAAACAGUUCGUUU-----------------------CUGAGCAGUUAAUAAAGGCAUUUAAAAAUAGAUGCAAUAAAUAAUGCUCC
.(((((..((....))...))).)).......((((((.....))))-----------------------))(((((..........(((((((....))))))).........))))). ( -21.51)
>DroEre_CAF1 27359 105 + 1
ACACUUCAGCGAAAGUCAAAAGUUGGCCAAGAGAAAACAGUUCGUUUUCGGCU--------------GCCUUGAGCAUUUGUUAAAAGCGUUUAAAAAUAGAUGCAACAAAUACUGCUC-
........((....))...(((..((((....((((((.....))))))))))--------------..)))(((((((((((....(((((((....)))))))))))))...)))))- ( -26.30)
>DroYak_CAF1 29864 117 + 1
ACACUUCAACGAAAGUCAAAAGUUGGCCGCAGGAAAACAGUUCGUUUCGGUCUCUUGUAUGUUG---GCUCUGAGCAGUUGAUAAAAGCGUUUAAAAAUAGAUGCAACAAAUAAAUCUCC
.....(((((.....(((..(((..((.((((((((((.....)))).....))))))..))..---))).)))...))))).....(((((((....)))))))............... ( -23.30)
>consensus
ACACUUCAACGAAAGUCAAAAGUUGGCCAAAGGGAAACAGUUCGUUU____C_______________GC_CUGAGCAGUUAAUAAAGGCGUUUAAAAAUAGAUGCAAUAAAUAAUGCUCC
.......((((((.((((.....)))).....(....)..))))))..........................(((((..........(((((((....))))))).........))))). (-16.19 = -16.39 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:04 2006