Locus 1783

Sequence ID 2R_DroMel_CAF1
Location 6,680,157 – 6,680,251
Length 94
Max. P 0.607422
window2965

overview

Window 5

Location 6,680,157 – 6,680,251
Length 94
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 77.88
Mean single sequence MFE -15.92
Consensus MFE -2.12
Energy contribution -3.28
Covariance contribution 1.16
Combinations/Pair 1.09
Mean z-score -1.63
Structure conservation index 0.13
SVM decision value 0.15
SVM RNA-class probability 0.607422
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6680157 94 - 20766785
CUUUUCACGGGCU-UUAUAUGCUGGGCUUAGCAACAUUUUAUGCAAAUCCGUUCCCAUUCGGAUUUGCUUUUUUUUUUUGGGGGGUUUUCUCCCA
.......(.(((.-......))).).................(((((((((........)))))))))............(((((....))))). ( -25.80)
>DroSec_CAF1 28651 89 - 1
CUUUUUAGGGGUU-UUAUAUGCUGGGCUUAGCAACAUUUUAUGCAAAUCCUUUUCCAUUCGGAUUUCCUUUUUUUUC-----AGCUUGUCUACCA
.........(((.-..(((.((((((....(((........)))((((((..........))))))........)))-----))).)))..))). ( -16.20)
>DroSim_CAF1 31708 89 - 1
CUUUUCACGGGUU-UUAUAUGCUGGGCUUAGCAACAUUUUAUGCAAAUCCUUUUCCAUUCGGAUUUACUUUUUUUUC-----GGCUUGUCUACCA
.........(((.-..(((.((((((....(((........)))((((((..........))))))........)))-----))).)))..))). ( -16.10)
>DroEre_CAF1 26329 84 - 1
CUUUUCACGGGUUUUUACAUG-----CUUAGCAACAUUUUACGCAAAUCCCCUACCAUUCUGGCAUUCUUUUU-GGC-----UGUUUUUUUCCCA
........(((.....(((.(-----((..((..........))..........((.....))..........-)))-----)))......))). ( -10.20)
>DroYak_CAF1 28603 85 - 1
CUUUUCAUCGGUU-UUAUAUGCGGGGCUUAGCAACAUUUUAUGCAAAUCCUCUCCCAUUCCGGCAUUCUUUUU-GGC-----U---UUUUACCCU
.........(((.-......((((((.((.(((........))).)).))))..((.....))..........-.))-----.---....))).. ( -11.30)
>consensus
CUUUUCACGGGUU_UUAUAUGCUGGGCUUAGCAACAUUUUAUGCAAAUCCUUUCCCAUUCGGAUUUUCUUUUUUUUC_____GGCUUUUCUCCCA
.........((...................(((........)))((((((..........))))))..........................)). ( -2.12 =  -3.28 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:03 2006