| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,435,843 – 1,436,003 |
| Length | 160 |
| Max. P | 0.908295 |
| Location | 1,435,843 – 1,435,963 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.78 |
| Mean single sequence MFE | -43.72 |
| Consensus MFE | -32.75 |
| Energy contribution | -32.75 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1435843 120 - 20766785 GAAGAUGCCAAGGACAUAUCACCGGGAAUUUGAGUGACCGGUGAUUUAUCCUCCUCCCGUUCUCCGCUGGGUGGAUAUUGAUACUCAGGCUGCAGUUGCGCGGCGUUGGUGUCAGUGACC ...........(((...((((((((..((....))..))))))))...)))(((.((((........)))).)))((((((((((.(.(((((......))))).).))))))))))... ( -47.90) >DroSec_CAF1 53022 120 - 1 GAAGAUGCCAAGGACAUAUCACCGGGAAUUUGAGUGACCGGUGAUUUAUCCUCCUCCCGUUCUCCGCUGGGUGGAUACUGAUACUCAGGCUGCAGUUGCGCGGCGUUGGUGUCAGUGACC ...........(((...((((((((..((....))..))))))))...)))(((.((((........)))).)))((((((((((.(.(((((......))))).).))))))))))... ( -50.20) >DroEre_CAF1 52386 120 - 1 GAGGAUGCCAAAGACAUAUCACCGGGAAUUUCAGUGACCGGUAACUUAUCCUCCUCCCGUUCCUCGCUGGGUGGAGACUGAUACUCAGGCAUCUGUUGAGCGGCAUUGCUGGCGCUGACC ..(((((((..((...(((((((((..((....))..)))))........((((.((((........)))).))))...))))))..)))))))(((.((((.((....)).))))))). ( -43.10) >DroYak_CAF1 57410 120 - 1 GAAGAUGCCAAAGACAUAUCACCGGGAAUUUCAGUGACCGGUAAUUUAUUAUCCUCUCGUUCAACGCUAGGUGGAGACUGAUACUCAGGCAUUUGUUGAGCGGCAUUGGUGGCGCUUACC ..(((((((..((...(((((((((..((....))..))))).........((((((.((.....)).))).)))....))))))..)))))))..((((((.((....)).)))))).. ( -33.70) >consensus GAAGAUGCCAAAGACAUAUCACCGGGAAUUUCAGUGACCGGUAAUUUAUCCUCCUCCCGUUCUCCGCUGGGUGGAGACUGAUACUCAGGCAGCAGUUGAGCGGCAUUGGUGGCACUGACC ...((((((..(((...((((((((..((....))..))))))))...)))(((.((((........)))).)))..(((.....)))((.((....))))))))))............. (-32.75 = -32.75 + 0.00)
| Location | 1,435,883 – 1,436,003 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.69 |
| Mean single sequence MFE | -41.62 |
| Consensus MFE | -36.25 |
| Energy contribution | -36.50 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1435883 120 + 20766785 CAAUAUCCACCCAGCGGAGAACGGGAGGAGGAUAAAUCACCGGUCACUCAAAUUCCCGGUGAUAUGUCCUUGGCAUCUUCAGAUUCUGACAUGUCGCUAAGCUCCGAGCAGGUUACUGAG ........(((...(((((....((..(((((((.((((((((............)))))))).)))))))(((((..((((...)))).))))).))...)))))....)))....... ( -39.20) >DroSec_CAF1 53062 120 + 1 CAGUAUCCACCCAGCGGAGAACGGGAGGAGGAUAAAUCACCGGUCACUCAAAUUCCCGGUGAUAUGUCCUUGGCAUCUUCAGAUUCUGACAUGUCGCUAAGCUCCGAGCAGGUUACUGAG (((((.((......(((((....((..(((((((.((((((((............)))))))).)))))))(((((..((((...)))).))))).))...)))))....)).))))).. ( -44.10) >DroEre_CAF1 52426 120 + 1 CAGUCUCCACCCAGCGAGGAACGGGAGGAGGAUAAGUUACCGGUCACUGAAAUUCCCGGUGAUAUGUCUUUGGCAUCCUCAGAGUCGGACAUGUCGCUGAGCUCCGAGCAGGUGACUGAG ...(((((.(((..........))).))))).........((((((((........(((((((((((((..(((.((....)))))))))))))))))).((.....)).)))))))).. ( -44.50) >DroYak_CAF1 57450 120 + 1 CAGUCUCCACCUAGCGUUGAACGAGAGGAUAAUAAAUUACCGGUCACUGAAAUUCCCGGUGAUAUGUCUUUGGCAUCUUCAGAUUCGGACAUGUCGCUAAGUUCGGAGCAGGUGACUGAG (((((...((((.((.((((((..(((((((....((((((((............)))))))).)))))))(((((.(((......))).))))).....)))))).))))))))))).. ( -38.70) >consensus CAGUAUCCACCCAGCGGAGAACGGGAGGAGGAUAAAUCACCGGUCACUCAAAUUCCCGGUGAUAUGUCCUUGGCAUCUUCAGAUUCGGACAUGUCGCUAAGCUCCGAGCAGGUGACUGAG (((((.((...(((((((((....(..(((((((.((((((((............)))))))).)))))))..).))))).(((........))))))).((.....)).)).))))).. (-36.25 = -36.50 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:21 2006