Locus 1778

Sequence ID 2R_DroMel_CAF1
Location 6,645,134 – 6,645,226
Length 92
Max. P 0.594771
window2957

overview

Window 7

Location 6,645,134 – 6,645,226
Length 92
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 81.40
Mean single sequence MFE -30.70
Consensus MFE -20.71
Energy contribution -20.22
Covariance contribution -0.50
Combinations/Pair 1.21
Mean z-score -1.50
Structure conservation index 0.67
SVM decision value 0.12
SVM RNA-class probability 0.594771
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6645134 92 - 20766785
------------AAUGGGCCAACCACAUGUACACAAAACGCCCAGUU-----------GUCUCUGUGUGCUGGCCAGAAGUGUCUGCUAAAUCUUGUGGUUGCUUUGCCGAGUUG
------------....(((((((((((.(((((((.(((.....)))-----------.....)))))))((((.(((....))))))).....))))))))....)))...... ( -28.50)
>DroSec_CAF1 194530 92 - 1
------------AAUGGGCCAACCACAUGUACAUAAAACGCCCAGUU-----------GUCUCUGUGUGCUGGCCAGAAGUGUCUGCAAAAUCUUGUGGUUGCUUUGCCGAGUUG
------------....(((((((((((.(((((((.(((.....)))-----------.....)))))))..((.(((....))))).......))))))))....)))...... ( -24.80)
>DroSim_CAF1 182306 92 - 1
------------AAUGGGCCAACCACAUGUACACAAAACGCCCAGUU-----------GUCUCUGUGUGCUGGCCAGAAGUGUCUGCAAAAUCUUGUGGUUGCUUUGCCGAGUUG
------------....(((((((((((.(((((((.(((.....)))-----------.....)))))))..((.(((....))))).......))))))))....)))...... ( -26.70)
>DroEre_CAF1 192566 89 - 1
------------CAUCGGCCAACCACUUGUACACAA-ACGCCCAGUU-------------GUCUGUGUGCUGGCCAGAAGUGUCUGCAAAAUCUUGUGGUUGCUUUGCCGAGUUG
------------..((((((((((((..(((((((.-(((......)-------------)).)))))))..((.(((....)))))........)))))))....))))).... ( -30.50)
>DroYak_CAF1 201162 115 - 1
UUCCCAUAGUGCAAUGGGCCAGCCACAUGUACACAAAACGGCCAGUUCAGUUGUGCGAGUGUGUGUGUGCUGGCCAGAAGUGUCUGCAAAAUCUUGUGGUUGCUUUGCCGAGUUG
........(.((....(((((((.(((..(((((...(((((.......)))))....)))))..)))))))))).((((((.(..(((....)))..).)))))))))...... ( -41.00)
>DroAna_CAF1 210006 88 - 1
------------CAUUGGCCG--CACGGAUACUCGAAAUAU-UAG-C-----------GUGUCUGUGUGUUGGCCAGAAGUGUCUGCAAAAUCUUGCGGUUGCUUUGCUCAGUUG
------------...((((((--(((((((((.(.......-..)-.-----------))))))))))...)))))((((((.((((((....)))))).))))))......... ( -32.70)
>consensus
____________AAUGGGCCAACCACAUGUACACAAAACGCCCAGUU___________GUCUCUGUGUGCUGGCCAGAAGUGUCUGCAAAAUCUUGUGGUUGCUUUGCCGAGUUG
................(((((.......(((((((............................)))))))))))).((((((.((((((....)))))).))))))......... (-20.71 = -20.22 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:56 2006