| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,629,610 – 6,629,717 |
| Length | 107 |
| Max. P | 0.602761 |
| Location | 6,629,610 – 6,629,717 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 85.28 |
| Mean single sequence MFE | -36.59 |
| Consensus MFE | -26.34 |
| Energy contribution | -26.90 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6629610 107 - 20766785 AAGCAUAAAGCUUGGGGCAGGCAAUGGCGAGGUGGGCGUGGCAUAUGUAAUGAUGUGCCCGCCGGCAUCGAAAAA-GAUUGGCAAAAAAUCUGGAGAAGUUC----GGGAAC ..((.....(((((...))))).....(((.((.((((.(((((((......))))))))))).)).))).....-.....))......((((((....)))----)))... ( -34.50) >DroSec_CAF1 181534 107 - 1 AACCAUAAAGCUUGGGGCGGGCAUUGGCGAGGUGGGCGUGGCAUAUGUAAUGAUGUGCCCGCCGGCGUCGAAAAA-GAUCGGCAAAAAAUCUGGAGAAGUUC----GGGAAC ..(((.......)))(.((..(.((..(((.((.((((.(((((((......))))))))))).)).)))..)).-)..)).)......((((((....)))----)))... ( -38.10) >DroSim_CAF1 169231 107 - 1 AACCAUAAAGCUUGGGGCGGGCAUUGGCGAGGUGGGCGUGGCAUAUGUAAUGAUGUGCCCGCCGGCGUCGAAAAA-GAUCGACAAAAAAUCUGGAGAAGUUC----GGGAAC ..(((.......)))..(((((.((..(.((((.((((.(((((((......))))))))))).))(((((....-..))))).......)).)..))))))----)..... ( -37.50) >DroEre_CAF1 179909 107 - 1 AACCAUAUAGCUUGGGGCGGGCAUUGGCGAGGUGGGCGUGGCAUAUGUAAUGAUGUGCCCGCCGGCGUCGAAAAA-GAUUGGCAAAAAAUCUGGAGAACUUU----GGGAAC ..(((.....(((.((((.(((.((..(((.((.((((.(((((((......))))))))))).)).)))..)).-).)).)).......)).))).....)----)).... ( -36.31) >DroYak_CAF1 189480 107 - 1 AAGCAUAAAGCUUGGGGCGGGCAUUGGCGAGGUGGGCGUGGCAUAUGUAAUGAUGUGCCCGCCGGCGUCGAAAAA-GAUUGGCAAAAAAUCUGGAGAAGUUC----GGGAAC ((((.....))))....(((((.((..(((.((.((((.(((((((......))))))))))).)).)))..))(-((((.......)))))......))))----)..... ( -38.00) >DroAna_CAF1 195915 112 - 1 GAGCAUAAAGUUUGUGGCGGGCGAUGGUUGAGAGGGCGUGGCAUAUGUAAUGAUGUGCCCGCAAGCAACCCGCCAGGGGAGGAGCAGGAGCAGGAGCGGUCGAGGGGGGAAG ((.(.....((((.(..(.((((..(((((.....(((.(((((((......))))))))))...)))))))))..)..).))))....((....))).))........... ( -35.10) >consensus AACCAUAAAGCUUGGGGCGGGCAUUGGCGAGGUGGGCGUGGCAUAUGUAAUGAUGUGCCCGCCGGCGUCGAAAAA_GAUUGGCAAAAAAUCUGGAGAAGUUC____GGGAAC .........(((((...))))).....(((.((.((((.(((((((......))))))))))).)).))).......................................... (-26.34 = -26.90 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:50 2006