Locus 1772

Sequence ID 2R_DroMel_CAF1
Location 6,628,996 – 6,629,101
Length 105
Max. P 0.777053
window2950

overview

Window 0

Location 6,628,996 – 6,629,101
Length 105
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 82.25
Mean single sequence MFE -16.38
Consensus MFE -10.70
Energy contribution -10.78
Covariance contribution 0.08
Combinations/Pair 1.11
Mean z-score -2.00
Structure conservation index 0.65
SVM decision value 0.55
SVM RNA-class probability 0.777053
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6628996 105 + 20766785
AAGUG--ACAAAAAAUUCAGUACUUCUUUUAUUGAGUUAGUAACUAAUAUCAAUGCUAAUUCAAUUCGCAGAUGCCCUUGUUUCCACCAAAAAUUUAAAUUACUACA
.((((--(......................((((((((((((...........))))))))))))..((....))........................)))))... ( -13.30)
>DroSec_CAF1 180945 106 + 1
AAAUGCCACAAAAAAUUCAGUACUUCCUUCAUUGAGUUAGUA-CCAAUAUCAAUGCUAAUUCAAUUCACAGAUGCUCUUGUUUGCACCAAAAAUUAAUAUAACUACA
...................(((........((((((((((((-..........)))))))))))).....(.(((........))).)...............))). ( -13.40)
>DroSim_CAF1 168639 106 + 1
AAAUGCCACAAAAAAUUCAGUACUUCUUUCAUUGAGUUAGUA-CCAAUAUCAAUGCUAAUUCAAUUCGCAGAUGCUCUUAGUACCACCAAAAAUUAACAUUACUACA
...................(((((......((((((((((((-..........))))))))))))..((....))....)))))....................... ( -14.90)
>DroEre_CAF1 179307 90 + 1
----------------UCGGUACUUUUCUCAUUGAGUUAGUA-CCAAUAUCAAUGCUAAUUCAAUUCGCAGAUGCUGUUGUGUCCACCAAAAAUUCACAUUACUACA
----------------..(((.........((((((((((((-..........)))))))))))).....(((((....))))).)))................... ( -16.60)
>DroYak_CAF1 188844 103 + 1
AAAUGGC---AAAAAUUCAGUACUCCCAUCAUUGGGUUAGUA-CCAAUAUCAAUGCUAAUUCAAUGAGCAGAUGCUGUUGUUUCCACCGAAAUUUAACAUUACUACA
...(((.---(((....(((((.((...((((((((((((((-..........))))))))))))))...)))))))...))))))..................... ( -23.70)
>consensus
AAAUG_CACAAAAAAUUCAGUACUUCUUUCAUUGAGUUAGUA_CCAAUAUCAAUGCUAAUUCAAUUCGCAGAUGCUCUUGUUUCCACCAAAAAUUAACAUUACUACA
..................((((........((((((((((((...........))))))))))))..((....)).........................))))... (-10.70 = -10.78 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:49 2006